| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is hetN [H]
Identifier: 17547040
GI number: 17547040
Start: 2520613
End: 2521440
Strand: Reverse
Name: hetN [H]
Synonym: RSc2321
Alternate gene names: 17547040
Gene position: 2521440-2520613 (Counterclockwise)
Preceding gene: 17547042
Following gene: 17547036
Centisome position: 67.85
GC content: 58.33
Gene sequence:
>828_bases ATGAAAAATTGTTTCGATTTTCGCGGAAAAACAGCACTCATCACGGGTGCATCGTCGGGTATCGGGCGCGAGTTCGCCTA TGCGTTAGCCAAACGTGGCGCGAAACTTCTGCTGGTTGCACGCTCTCGCGACAAGCTGCACGATCTGACCGCTGAATTGC GACGCGACTACGCCTGCGACGCAGATTTCCTGACGGTTGACCTGAGCGCACCTGACGCCATCCCTACGGTGGCGCATCTT CTCAAGGCGACCGGCACGGTCGTCGATGTCCTCATCAACAACGCGGGCTTTGCGACTTACGGACGCTTCGAAACGATTCC GTGGACGCGCCAACGCGATGAAGTGCTGGTGAACTGCATGGCAGCGATCGAGTTGACGCATCTTCTGCTGCCGGGGATGC AGGCACGATCCGATGGCGCAGTCATTAACGTCGCGTCAACAGCCGCATTCCAGCCCGATCCTTATATGGCGATCTACGGC GCCACCAAGGCCTTTCTTTTGTCATTTTCAGAAGCCGTTTGGGCTGAGAACCGGCATCGCGGCATTCGGGTTCTCGCGCT ATGTCCCGGCGCGACGCAAACCGGCTTTTTTGATGTCGTTGGCGCAAAGGAAGCGGCTGTCGGCACGCCGATGCCTGTCG CGAGCGTGGTGCAGGACGCACTGTGGGCGCTGGATCGCAATCGGAGCTATCGGATTGTTGGGACACAGAATCGGCTGCTT GCCAATTTGCAAAGGCTGTTGAGCCGCGAGATGTCGGCACGCCTGGTTGAGAAAATCCTTCGACCGAGAGGCGCTCAGGA ACTGGAGACAGGAGATACCAGCGCGTAG
Upstream 100 bases:
>100_bases TGTTGCCTGTACCCAATGTTGTGGATCGTCATTAGGGCTTGACCGTTGCCTTTAGTCAACGGTTTACAGTCCGATCCACC TTCCACTCCATCAGCAGGCC
Downstream 100 bases:
>100_bases GGTACGGCCAGGTAGCCGGTCAAGGTTGAGAGCCACGGATCGTTTTCGGTGGATAGCTCGCCAGCACGACCGAGGTCGTG ACCGGACCGAATCTGGCCAG
Product: dehydrogenase/reductase oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MKNCFDFRGKTALITGASSGIGREFAYALAKRGAKLLLVARSRDKLHDLTAELRRDYACDADFLTVDLSAPDAIPTVAHL LKATGTVVDVLINNAGFATYGRFETIPWTRQRDEVLVNCMAAIELTHLLLPGMQARSDGAVINVASTAAFQPDPYMAIYG ATKAFLLSFSEAVWAENRHRGIRVLALCPGATQTGFFDVVGAKEAAVGTPMPVASVVQDALWALDRNRSYRIVGTQNRLL ANLQRLLSREMSARLVEKILRPRGAQELETGDTSA
Sequences:
>Translated_275_residues MKNCFDFRGKTALITGASSGIGREFAYALAKRGAKLLLVARSRDKLHDLTAELRRDYACDADFLTVDLSAPDAIPTVAHL LKATGTVVDVLINNAGFATYGRFETIPWTRQRDEVLVNCMAAIELTHLLLPGMQARSDGAVINVASTAAFQPDPYMAIYG ATKAFLLSFSEAVWAENRHRGIRVLALCPGATQTGFFDVVGAKEAAVGTPMPVASVVQDALWALDRNRSYRIVGTQNRLL ANLQRLLSREMSARLVEKILRPRGAQELETGDTSA >Mature_275_residues MKNCFDFRGKTALITGASSGIGREFAYALAKRGAKLLLVARSRDKLHDLTAELRRDYACDADFLTVDLSAPDAIPTVAHL LKATGTVVDVLINNAGFATYGRFETIPWTRQRDEVLVNCMAAIELTHLLLPGMQARSDGAVINVASTAAFQPDPYMAIYG ATKAFLLSFSEAVWAENRHRGIRVLALCPGATQTGFFDVVGAKEAAVGTPMPVASVVQDALWALDRNRSYRIVGTQNRLL ANLQRLLSREMSARLVEKILRPRGAQELETGDTSA
Specific function: May be involved in repressing heterocyst differentiation and may be essential for preventing all vegetative cells from differentiating [H]
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705855, Length=243, Percent_Identity=29.2181069958848, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI226371731, Length=184, Percent_Identity=33.1521739130435, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI4557649, Length=193, Percent_Identity=30.0518134715026, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI20149619, Length=239, Percent_Identity=28.4518828451883, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI40807363, Length=193, Percent_Identity=30.0518134715026, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI142976729, Length=256, Percent_Identity=28.515625, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI210032110, Length=250, Percent_Identity=26.8, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI32483357, Length=191, Percent_Identity=29.8429319371728, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI31542939, Length=221, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7706318, Length=208, Percent_Identity=29.3269230769231, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=32.994923857868, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI109715829, Length=197, Percent_Identity=29.9492385786802, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI5031737, Length=202, Percent_Identity=32.1782178217822, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=28.4210526315789, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI32455239, Length=207, Percent_Identity=29.951690821256, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI5031765, Length=207, Percent_Identity=29.951690821256, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1786701, Length=197, Percent_Identity=30.9644670050761, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87082100, Length=188, Percent_Identity=33.5106382978723, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787335, Length=191, Percent_Identity=30.8900523560209, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87082160, Length=194, Percent_Identity=32.4742268041237, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=29.6703296703297, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1790717, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786812, Length=190, Percent_Identity=29.4736842105263, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787905, Length=190, Percent_Identity=26.8421052631579, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789208, Length=201, Percent_Identity=26.865671641791, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17570069, Length=261, Percent_Identity=29.1187739463602, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71997402, Length=195, Percent_Identity=30.2564102564103, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI193203115, Length=264, Percent_Identity=29.5454545454545, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562904, Length=255, Percent_Identity=29.4117647058824, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=30.8550185873606, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=29.0076335877863, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=31.0606060606061, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193203117, Length=248, Percent_Identity=29.4354838709677, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562910, Length=255, Percent_Identity=29.8039215686275, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=29.6577946768061, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI212646214, Length=205, Percent_Identity=27.8048780487805, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI25152911, Length=185, Percent_Identity=31.3513513513514, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=27.7992277992278, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17559552, Length=204, Percent_Identity=28.4313725490196, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17508895, Length=200, Percent_Identity=29.5, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17557668, Length=204, Percent_Identity=27.9411764705882, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=26.4591439688716, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=27.4131274131274, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=26.7175572519084, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71994604, Length=196, Percent_Identity=32.1428571428571, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17562990, Length=252, Percent_Identity=26.984126984127, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17563726, Length=296, Percent_Identity=26.3513513513513, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17564282, Length=246, Percent_Identity=27.2357723577236, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193204405, Length=211, Percent_Identity=30.8056872037915, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71994600, Length=198, Percent_Identity=31.8181818181818, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17561402, Length=202, Percent_Identity=25.2475247524752, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=28.030303030303, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560176, Length=188, Percent_Identity=27.1276595744681, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560676, Length=210, Percent_Identity=27.6190476190476, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=25.7692307692308, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=27.6119402985075, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115534694, Length=194, Percent_Identity=30.4123711340206, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=238, Percent_Identity=30.672268907563, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6319635, Length=185, Percent_Identity=28.1081081081081, Blast_Score=75, Evalue=9e-15, Organism=Drosophila melanogaster, GI24640442, Length=224, Percent_Identity=34.375, Blast_Score=120, Evalue=8e-28, Organism=Drosophila melanogaster, GI28574402, Length=200, Percent_Identity=30.5, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI24584744, Length=200, Percent_Identity=30.5, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI24584748, Length=190, Percent_Identity=32.1052631578947, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI161076933, Length=190, Percent_Identity=32.1052631578947, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24584752, Length=188, Percent_Identity=30.8510638297872, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21357041, Length=189, Percent_Identity=30.6878306878307, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI23397609, Length=193, Percent_Identity=34.7150259067358, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24644339, Length=194, Percent_Identity=32.9896907216495, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24639444, Length=195, Percent_Identity=32.3076923076923, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI28571526, Length=189, Percent_Identity=29.6296296296296, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI21355631, Length=174, Percent_Identity=32.183908045977, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI24580925, Length=212, Percent_Identity=28.7735849056604, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24665247, Length=197, Percent_Identity=27.9187817258883, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221331216, Length=197, Percent_Identity=27.9187817258883, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364494, Length=201, Percent_Identity=30.3482587064677, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI221331218, Length=197, Percent_Identity=27.9187817258883, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24665243, Length=197, Percent_Identity=27.9187817258883, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24651139, Length=203, Percent_Identity=30.0492610837438, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24643142, Length=185, Percent_Identity=33.5135135135135, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21356301, Length=194, Percent_Identity=28.3505154639175, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007236, Length=193, Percent_Identity=28.4974093264249, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29912; Mature: 29912
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNCFDFRGKTALITGASSGIGREFAYALAKRGAKLLLVARSRDKLHDLTAELRRDYACD CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCC ADFLTVDLSAPDAIPTVAHLLKATGTVVDVLINNAGFATYGRFETIPWTRQRDEVLVNCM CCEEEEECCCCCHHHHHHHHHHHHCHHEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHH AAIELTHLLLPGMQARSDGAVINVASTAAFQPDPYMAIYGATKAFLLSFSEAVWAENRHR HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCC GIRVLALCPGATQTGFFDVVGAKEAAVGTPMPVASVVQDALWALDRNRSYRIVGTQNRLL CEEEEEECCCCCCCCCEEECCCCHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHHH ANLQRLLSREMSARLVEKILRPRGAQELETGDTSA HHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC >Mature Secondary Structure MKNCFDFRGKTALITGASSGIGREFAYALAKRGAKLLLVARSRDKLHDLTAELRRDYACD CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCC ADFLTVDLSAPDAIPTVAHLLKATGTVVDVLINNAGFATYGRFETIPWTRQRDEVLVNCM CCEEEEECCCCCHHHHHHHHHHHHCHHEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHH AAIELTHLLLPGMQARSDGAVINVASTAAFQPDPYMAIYGATKAFLLSFSEAVWAENRHR HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCC GIRVLALCPGATQTGFFDVVGAKEAAVGTPMPVASVVQDALWALDRNRSYRIVGTQNRLL CEEEEEECCCCCCCCCEEECCCCHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHHH ANLQRLLSREMSARLVEKILRPRGAQELETGDTSA HHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8157596; 11759840 [H]