| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is thrB
Identifier: 17546952
GI number: 17546952
Start: 2422915
End: 2423919
Strand: Direct
Name: thrB
Synonym: RSc2233
Alternate gene names: 17546952
Gene position: 2422915-2423919 (Clockwise)
Preceding gene: 17546951
Following gene: 17546953
Centisome position: 65.19
GC content: 68.16
Gene sequence:
>1005_bases ATGGCTGTTTTCACCCCGGTCACCAACGCCGAGATCGCCCTCTGGCTGGAGCAATACGACGTGGGCACGGTCCGCGCGCT GCGCGGCATTCCCTCGGGGATCGAAAACACCAACTTCTTCCTGACCACGGAGAAGGACGGCGCCACGCACGAGTACGTCG TCACGCTGTTCGAGCGGCTGACCAGCGAGCAACTGCCGTTCTACCTGTACCTGATGCAGCATCTGGCGCAGCACGGCATC TGCGTGCCGGCGCCGATTCCCGGCCGCGACGGCGCGATCCTGCGCCCGCTCAAGGGCAAGCCGGCGACCATCGTGACGCG CCTGCCCGGACGCTCGAACCTGGCGCCCACGACGAGCGAATGCGCCATCGTCGGCGACATGCTGGCGCGCATGCACCTGG CCGGCCGCGACTACCCGCGGCACCAGCCCAACCTGCGCAGCCTGCCGTGGTGGAACGAAGTGGTGCCCGACATCCAGCCC TTCGTGCAGGGCGCCACGCGCGAGCTGCTGGTCGCCGAGCTGGCCCACCAGCAGCGCTTCTTCGGCAGCGCCGACTATGC CGCCCTGCCCGAGGGCCCGTGCCACTGCGACCTGTTCCGCGACAACGTGCTGTTCGAGCCGGCCACTGACAGCCAGCCCG AGCGCCTGGGCGGGTTCTTCGATTTCTATTTCGCCGGCGTCGACAAATGGCTGTTCGACGTGGCCGTGACCGTCAACGAC TGGTGCGTCGACCTCGCCACGGGTGCGCTCGATGCCGAACGGATGCGCGCCATGCTGCGCGCCTATCACGCGGTGCGGCC TTTCACCGACGCGGAGGCCCGTCACTGGCGGGACATGCTGCGCGCCGCGGCCTATCGCTTCTGGGTATCGCGCCTGTGGG ACTTCCACCTGCCGCGCGACGCCGAACTGCTGCAGCCGCATGATCCGACCCACTTCGAGCGCGTGCTGCGCGAACGGGTG CGCGCCGAGGGGCTGACATTGGATATTCCCGAACCATGCAACTGA
Upstream 100 bases:
>100_bases CATCCTGAAGTTCTGAGATCCGCGCCGCATTGCCGGCGCCGAGCGGCGGTCCAGCCCATCTGGCCGCCGCGTTTCCTTTT ACCGTTTTCCGTTTCATAGC
Downstream 100 bases:
>100_bases TTGAAGTCTCCGGCAAGCAGGGCTACGTCTGGCTGCGCCAGGGTGCGTGGCTGTTCCGCAAGAACCCGATCGGGTTCCTG CTGCTGCTGTTCATCTACCT
Product: homoserine kinase
Products: NA
Alternate protein names: HK; HSK
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MAVFTPVTNAEIALWLEQYDVGTVRALRGIPSGIENTNFFLTTEKDGATHEYVVTLFERLTSEQLPFYLYLMQHLAQHGI CVPAPIPGRDGAILRPLKGKPATIVTRLPGRSNLAPTTSECAIVGDMLARMHLAGRDYPRHQPNLRSLPWWNEVVPDIQP FVQGATRELLVAELAHQQRFFGSADYAALPEGPCHCDLFRDNVLFEPATDSQPERLGGFFDFYFAGVDKWLFDVAVTVND WCVDLATGALDAERMRAMLRAYHAVRPFTDAEARHWRDMLRAAAYRFWVSRLWDFHLPRDAELLQPHDPTHFERVLRERV RAEGLTLDIPEPCN
Sequences:
>Translated_334_residues MAVFTPVTNAEIALWLEQYDVGTVRALRGIPSGIENTNFFLTTEKDGATHEYVVTLFERLTSEQLPFYLYLMQHLAQHGI CVPAPIPGRDGAILRPLKGKPATIVTRLPGRSNLAPTTSECAIVGDMLARMHLAGRDYPRHQPNLRSLPWWNEVVPDIQP FVQGATRELLVAELAHQQRFFGSADYAALPEGPCHCDLFRDNVLFEPATDSQPERLGGFFDFYFAGVDKWLFDVAVTVND WCVDLATGALDAERMRAMLRAYHAVRPFTDAEARHWRDMLRAAAYRFWVSRLWDFHLPRDAELLQPHDPTHFERVLRERV RAEGLTLDIPEPCN >Mature_333_residues AVFTPVTNAEIALWLEQYDVGTVRALRGIPSGIENTNFFLTTEKDGATHEYVVTLFERLTSEQLPFYLYLMQHLAQHGIC VPAPIPGRDGAILRPLKGKPATIVTRLPGRSNLAPTTSECAIVGDMLARMHLAGRDYPRHQPNLRSLPWWNEVVPDIQPF VQGATRELLVAELAHQQRFFGSADYAALPEGPCHCDLFRDNVLFEPATDSQPERLGGFFDFYFAGVDKWLFDVAVTVNDW CVDLATGALDAERMRAMLRAYHAVRPFTDAEARHWRDMLRAAAYRFWVSRLWDFHLPRDAELLQPHDPTHFERVLRERVR AEGLTLDIPEPCN
Specific function: Unknown
COG id: COG2334
COG function: function code R; Putative homoserine kinase type II (protein kinase fold)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pseudomonas-type thrB family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): KHSE_RALSO (Q8XX83)
Other databases:
- EMBL: AL646052 - RefSeq: NP_520354.1 - ProteinModelPortal: Q8XX83 - SMR: Q8XX83 - GeneID: 1221078 - GenomeReviews: AL646052_GR - KEGG: rso:RSc2233 - NMPDR: fig|267608.1.peg.2233 - HOGENOM: HBG309377 - OMA: ADLFRDN - ProtClustDB: PRK05231 - BioCyc: RSOL267608:RSC2233-MONOMER - BRENDA: 2.7.1.39 - HAMAP: MF_00301 - InterPro: IPR002575 - InterPro: IPR005280 - InterPro: IPR011009 - TIGRFAMs: TIGR00938
Pfam domain/function: PF01636 APH; SSF56112 Kinase_like
EC number: =2.7.1.39
Molecular weight: Translated: 37995; Mature: 37864
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVFTPVTNAEIALWLEQYDVGTVRALRGIPSGIENTNFFLTTEKDGATHEYVVTLFERL CEEECCCCCCEEEEEEHHCCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH TSEQLPFYLYLMQHLAQHGICVPAPIPGRDGAILRPLKGKPATIVTRLPGRSNLAPTTSE HHCCCCHHHHHHHHHHHCCCEECCCCCCCCCCEECCCCCCCCEEEEECCCCCCCCCCCHH CAIVGDMLARMHLAGRDYPRHQPNLRSLPWWNEVVPDIQPFVQGATRELLVAELAHQQRF HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGSADYAALPEGPCHCDLFRDNVLFEPATDSQPERLGGFFDFYFAGVDKWLFDVAVTVND CCCCCCCCCCCCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH WCVDLATGALDAERMRAMLRAYHAVRPFTDAEARHWRDMLRAAAYRFWVSRLWDFHLPRD HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC AELLQPHDPTHFERVLRERVRAEGLTLDIPEPCN CHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCC >Mature Secondary Structure AVFTPVTNAEIALWLEQYDVGTVRALRGIPSGIENTNFFLTTEKDGATHEYVVTLFERL EEECCCCCCEEEEEEHHCCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH TSEQLPFYLYLMQHLAQHGICVPAPIPGRDGAILRPLKGKPATIVTRLPGRSNLAPTTSE HHCCCCHHHHHHHHHHHCCCEECCCCCCCCCCEECCCCCCCCEEEEECCCCCCCCCCCHH CAIVGDMLARMHLAGRDYPRHQPNLRSLPWWNEVVPDIQPFVQGATRELLVAELAHQQRF HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGSADYAALPEGPCHCDLFRDNVLFEPATDSQPERLGGFFDFYFAGVDKWLFDVAVTVND CCCCCCCCCCCCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH WCVDLATGALDAERMRAMLRAYHAVRPFTDAEARHWRDMLRAAAYRFWVSRLWDFHLPRD HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC AELLQPHDPTHFERVLRERVRAEGLTLDIPEPCN CHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11823852