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The map label for this gene is ybgL [C]

Identifier: 17546888

GI number: 17546888

Start: 2352050

End: 2352793

Strand: Reverse

Name: ybgL [C]

Synonym: RSc2169

Alternate gene names: 17546888

Gene position: 2352793-2352050 (Counterclockwise)

Preceding gene: 17546889

Following gene: 17546887

Centisome position: 63.31

GC content: 71.37

Gene sequence:

>744_bases
ATGACAGCAATCGACCTGAACGCAGACCTGGGTGAAGGCTGCGACAACGACGAAGCCCTGCTCGCGCTGGTGAGCTCGGC
CAACATCGCCTGCGGCTGGCACGCGGGCGACGTCAACACGATGCGCCAGACCACCGCCTGGGCGCTGCGCCAGGGCGTGT
CGATCGGCGCGCATCCGAGCTTCCCCGACCGCGAGAACTTCGGCCGGACCGAGATGCACCTGCCGCCGGACGAGGTCTAT
GCCGGCGTGCTGTTCCAGATCGGCGGCCTGTCGGCCATCGTGCGGGCGCAGGGCGGCAGGCTCGCGCACGTCAAGCCGCA
TGGCGCGCTGTATAACCAGGCCGCGCGCGACCGGCCGCTGGCCATGGCGATCGCCCGCGCGGTGCGCGACTTCGATGCGT
CGCTGGCGGTGTTCGGGCTGGCCGGCGGCGAGCTGGTGCTGGCCGCGCGCGAGCTGGGCCTGGCCGCCAAGGAAGAGGTC
TTCGCCGACCGCGGCTACAACGCCGACGGCACGCTGGTCAAGCGCGGCACACCCGGTGCGCTGCTCGAAAACGAAGAAGC
CGCGCTATCGCAGACACTTGCCATGGTGCGCGAACAGCGTGTCCAATCCGTCGACGGCGTGTGGGTCCCGATTCGCGCGC
AGACCGTCTGCCTGCACGGCGACGGCGCGCATGCGCTGGCGTTCGCGCGGCGCATCCGGGACCGGCTCGGCAGCGAGGGC
ATCGCTGTGCGCGCCGGCGCCTGA

Upstream 100 bases:

>100_bases
ATCGAGACGGCGCTGGACTGGCAGCGCCGGGGCATCCTGTCGGTGGCGCGGCGCACCGCCAGGACACGCCCGATGGCTTG
ATGGAACGAGGAACCTACCG

Downstream 100 bases:

>100_bases
AACCTGCCCCGCACGGTGGTTCGCGCGGGGCTTTTTTTCACAACAAGAAGGGGGGAAGTTCCACATGGATACGGCAGTGA
ATCTATGGCCGCTGATCGGG

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTAIDLNADLGEGCDNDEALLALVSSANIACGWHAGDVNTMRQTTAWALRQGVSIGAHPSFPDRENFGRTEMHLPPDEVY
AGVLFQIGGLSAIVRAQGGRLAHVKPHGALYNQAARDRPLAMAIARAVRDFDASLAVFGLAGGELVLAARELGLAAKEEV
FADRGYNADGTLVKRGTPGALLENEEAALSQTLAMVREQRVQSVDGVWVPIRAQTVCLHGDGAHALAFARRIRDRLGSEG
IAVRAGA

Sequences:

>Translated_247_residues
MTAIDLNADLGEGCDNDEALLALVSSANIACGWHAGDVNTMRQTTAWALRQGVSIGAHPSFPDRENFGRTEMHLPPDEVY
AGVLFQIGGLSAIVRAQGGRLAHVKPHGALYNQAARDRPLAMAIARAVRDFDASLAVFGLAGGELVLAARELGLAAKEEV
FADRGYNADGTLVKRGTPGALLENEEAALSQTLAMVREQRVQSVDGVWVPIRAQTVCLHGDGAHALAFARRIRDRLGSEG
IAVRAGA
>Mature_246_residues
TAIDLNADLGEGCDNDEALLALVSSANIACGWHAGDVNTMRQTTAWALRQGVSIGAHPSFPDRENFGRTEMHLPPDEVYA
GVLFQIGGLSAIVRAQGGRLAHVKPHGALYNQAARDRPLAMAIARAVRDFDASLAVFGLAGGELVLAARELGLAAKEEVF
ADRGYNADGTLVKRGTPGALLENEEAALSQTLAMVREQRVQSVDGVWVPIRAQTVCLHGDGAHALAFARRIRDRLGSEGI
AVRAGA

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=242, Percent_Identity=63.2231404958678, Blast_Score=313, Evalue=8e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2169_RALSO (Q8XXE5)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_520290.1
- ProteinModelPortal:   Q8XXE5
- SMR:   Q8XXE5
- GeneID:   1221013
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc2169
- NMPDR:   fig|267608.1.peg.2169
- HOGENOM:   HBG482818
- OMA:   QTICLHG
- ProtClustDB:   PRK05406
- BioCyc:   RSOL267608:RSC2169-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 26127; Mature: 25996

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAIDLNADLGEGCDNDEALLALVSSANIACGWHAGDVNTMRQTTAWALRQGVSIGAHPS
CCEEECCCCCCCCCCCCHHHHEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
FPDRENFGRTEMHLPPDEVYAGVLFQIGGLSAIVRAQGGRLAHVKPHGALYNQAARDRPL
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHEEEECCCCEEEEECCCCHHHHHHHCCCHH
AMAIARAVRDFDASLAVFGLAGGELVLAARELGLAAKEEVFADRGYNADGTLVKRGTPGA
HHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHCCHHHHHHHHCCCCCCCCCEEECCCCCC
LLENEEAALSQTLAMVREQRVQSVDGVWVPIRAQTVCLHGDGAHALAFARRIRDRLGSEG
EECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCC
IAVRAGA
EEEEECC
>Mature Secondary Structure 
TAIDLNADLGEGCDNDEALLALVSSANIACGWHAGDVNTMRQTTAWALRQGVSIGAHPS
CEEECCCCCCCCCCCCHHHHEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
FPDRENFGRTEMHLPPDEVYAGVLFQIGGLSAIVRAQGGRLAHVKPHGALYNQAARDRPL
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHEEEECCCCEEEEECCCCHHHHHHHCCCHH
AMAIARAVRDFDASLAVFGLAGGELVLAARELGLAAKEEVFADRGYNADGTLVKRGTPGA
HHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHCCHHHHHHHHCCCCCCCCCEEECCCCCC
LLENEEAALSQTLAMVREQRVQSVDGVWVPIRAQTVCLHGDGAHALAFARRIRDRLGSEG
EECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCC
IAVRAGA
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852