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The map label for this gene is 17546855

Identifier: 17546855

GI number: 17546855

Start: 2316865

End: 2317923

Strand: Direct

Name: 17546855

Synonym: RSc2136

Alternate gene names: NA

Gene position: 2316865-2317923 (Clockwise)

Preceding gene: 17546854

Following gene: 17546856

Centisome position: 62.34

GC content: 63.74

Gene sequence:

>1059_bases
ATGACGTACATCATCACCCGCTGCATCGCACCCGCTGTCATTGCCGCTGCGCTCGCCCTGCCCGCGCATGCCCAGTCTTC
TGTCACGTTGTACGGACGGGTCGTCGGCGGCGTCGAGTACATCGACAAGGTGGCCGTTCCGGCCACGGGCAAGACCGGAT
CGCTGCTGCAAGCCGCCGGCAATCAGTGGGGAACCAGCATGTTCGGCATGAAAGGCAGCGAGTCGCTCGGCGGAGGTCTG
CAGGCGCTCTTTACGCTGGAAAGCGGCTTCAGTCTGCCCAATTCCGCGCTGAACGGGCCGGGCCTGTTCAATCGCCGTTC
GTACGTCGGGCTTTCCAGTCCGAGCTGGGGTACGTTGATCGTCGGCAAGAACCTGTCCATCAGCAACGATATCTGGGACA
TTGACCCGACCGGGCAGCAATTCATGAGCACCGCCACCCTCGTCAAGGGCAGGAACTGGCCGGGTGCCGATAACATGATC
GAATACCGCTCCCCGGATCTGGGCGGATTCTCGTTCGGGGCCCAGGCTTCCCTCAGCGAGCAACCCGCAGGACGGCGCGT
CAGTGCTCAAGGGCTGTCGGCAACTTACCAGACCAGCGACCTCATGCTTCGGGGCATCTATACGGAGCGGCGAGACAGTG
CCGGCGCGTTCAGCGATGTCTACAACGCTTCCAAGGATGGCATCCTGGGCGGCACGTATCGCATCGGGCCGGCCAAGCTC
TTTGCCGGGTATGAACGCATCCTGGCATCGCAGACCGGCGCGGACACGGCACCTTCGGCGCTCAGCCAGGCGTGGCTCGG
GATCCGCTACGACCTGACGCAAGCGGTGACCCTCATTGGCGCCGTCTACCACGTCAAAAGCAACCAGTCCGGCGGCAATG
CCACGCTGGCCATGCTGGGCGTCGACTATTACCTATCGAAGCGAACCTTCCTCTATGCCTCGCTCGGCGGGGTGAGCAAC
GGCGCGAACGCGGACTACGCGGCCGATGTCACGGCGGCGGGCCCCGGCGTGGGCAAGTCGCAACGCGTCGTTTATGTCGG
CATGGGACATTCGTTCTGA

Upstream 100 bases:

>100_bases
CGATGGTGTCACCTGCCCGTACGCCTCGGCGATGGGCCAATGATGGTCGGGTACAAAAACCAGCAGCCCGACCGGTTATG
CGTTTTGGAGGAGACCACTC

Downstream 100 bases:

>100_bases
CTTGAAAGATCGGTGGCATCGCAGGCGATGTCACCGATCCATCGGCGACGGCCGCGAAGGCTGAGTGTGTTGAAGCCGTA
GCCCTTCCCTATTGATAACG

Product: porin signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MTYIITRCIAPAVIAAALALPAHAQSSVTLYGRVVGGVEYIDKVAVPATGKTGSLLQAAGNQWGTSMFGMKGSESLGGGL
QALFTLESGFSLPNSALNGPGLFNRRSYVGLSSPSWGTLIVGKNLSISNDIWDIDPTGQQFMSTATLVKGRNWPGADNMI
EYRSPDLGGFSFGAQASLSEQPAGRRVSAQGLSATYQTSDLMLRGIYTERRDSAGAFSDVYNASKDGILGGTYRIGPAKL
FAGYERILASQTGADTAPSALSQAWLGIRYDLTQAVTLIGAVYHVKSNQSGGNATLAMLGVDYYLSKRTFLYASLGGVSN
GANADYAADVTAAGPGVGKSQRVVYVGMGHSF

Sequences:

>Translated_352_residues
MTYIITRCIAPAVIAAALALPAHAQSSVTLYGRVVGGVEYIDKVAVPATGKTGSLLQAAGNQWGTSMFGMKGSESLGGGL
QALFTLESGFSLPNSALNGPGLFNRRSYVGLSSPSWGTLIVGKNLSISNDIWDIDPTGQQFMSTATLVKGRNWPGADNMI
EYRSPDLGGFSFGAQASLSEQPAGRRVSAQGLSATYQTSDLMLRGIYTERRDSAGAFSDVYNASKDGILGGTYRIGPAKL
FAGYERILASQTGADTAPSALSQAWLGIRYDLTQAVTLIGAVYHVKSNQSGGNATLAMLGVDYYLSKRTFLYASLGGVSN
GANADYAADVTAAGPGVGKSQRVVYVGMGHSF
>Mature_351_residues
TYIITRCIAPAVIAAALALPAHAQSSVTLYGRVVGGVEYIDKVAVPATGKTGSLLQAAGNQWGTSMFGMKGSESLGGGLQ
ALFTLESGFSLPNSALNGPGLFNRRSYVGLSSPSWGTLIVGKNLSISNDIWDIDPTGQQFMSTATLVKGRNWPGADNMIE
YRSPDLGGFSFGAQASLSEQPAGRRVSAQGLSATYQTSDLMLRGIYTERRDSAGAFSDVYNASKDGILGGTYRIGPAKLF
AGYERILASQTGADTAPSALSQAWLGIRYDLTQAVTLIGAVYHVKSNQSGGNATLAMLGVDYYLSKRTFLYASLGGVSNG
ANADYAADVTAAGPGVGKSQRVVYVGMGHSF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 36737; Mature: 36606

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYIITRCIAPAVIAAALALPAHAQSSVTLYGRVVGGVEYIDKVAVPATGKTGSLLQAAG
CCEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHCC
NQWGTSMFGMKGSESLGGGLQALFTLESGFSLPNSALNGPGLFNRRSYVGLSSPSWGTLI
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEE
VGKNLSISNDIWDIDPTGQQFMSTATLVKGRNWPGADNMIEYRSPDLGGFSFGAQASLSE
EECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
QPAGRRVSAQGLSATYQTSDLMLRGIYTERRDSAGAFSDVYNASKDGILGGTYRIGPAKL
CCCCCEEECCCCCEEEEHHHHEEEEHHHHCCCCCCCHHHHHCCCCCCCCCCEEECCHHHH
FAGYERILASQTGADTAPSALSQAWLGIRYDLTQAVTLIGAVYHVKSNQSGGNATLAMLG
HHHHHHHHHHCCCCCCCHHHHHHHHHCEEHHHHHHHHHHHHHEEEECCCCCCCEEEEEEE
VDYYLSKRTFLYASLGGVSNGANADYAADVTAAGPGVGKSQRVVYVGMGHSF
HHHHHCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
TYIITRCIAPAVIAAALALPAHAQSSVTLYGRVVGGVEYIDKVAVPATGKTGSLLQAAG
CEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHCC
NQWGTSMFGMKGSESLGGGLQALFTLESGFSLPNSALNGPGLFNRRSYVGLSSPSWGTLI
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEE
VGKNLSISNDIWDIDPTGQQFMSTATLVKGRNWPGADNMIEYRSPDLGGFSFGAQASLSE
EECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
QPAGRRVSAQGLSATYQTSDLMLRGIYTERRDSAGAFSDVYNASKDGILGGTYRIGPAKL
CCCCCEEECCCCCEEEEHHHHEEEEHHHHCCCCCCCHHHHHCCCCCCCCCCEEECCHHHH
FAGYERILASQTGADTAPSALSQAWLGIRYDLTQAVTLIGAVYHVKSNQSGGNATLAMLG
HHHHHHHHHHCCCCCCCHHHHHHHHHCEEHHHHHHHHHHHHHEEEECCCCCCCEEEEEEE
VDYYLSKRTFLYASLGGVSNGANADYAADVTAAGPGVGKSQRVVYVGMGHSF
HHHHHCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]