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The map label for this gene is ydfH [C]

Identifier: 17546833

GI number: 17546833

Start: 2290499

End: 2291230

Strand: Direct

Name: ydfH [C]

Synonym: RSc2114

Alternate gene names: 17546833

Gene position: 2290499-2291230 (Clockwise)

Preceding gene: 17546826

Following gene: 17546836

Centisome position: 61.63

GC content: 61.34

Gene sequence:

>732_bases
ATGACGAGAACGAAGGTCGCCGCGGAAAGCGATGCGCAAGTGGCCGATCCTTCTGTTGACCGGAAGGCGCTATTGAGCGA
AGCGCTGCGCAGGCGGATCGTCAGCATGGAAATGGCGCCCGGCGCGGTGGTGGACGAGCTGGCGCTCAGTGAGGAATTCG
GCCTCTCCCGCCCCCCCGTCCGGGAAATCATGCGGCAGATGGCGGCCGAGGGATACATCGACCTCGAAGCCAATCGGGCA
GCGCGCGTTTCGTCGATGAACCACCAGTCGTTGAGGAATTTCTTCCTGGCCGCCCCGCTCATTTACATCGCGACCACGCA
ATTGGCGGCGGTGAATGCGGCACAGCACGAAATTGATGCGCTGAAGGCCATTCAGTTGCGGTTTCGTCAGGCCATCGAAG
ACAACGATGTCGAGAGCCGCGTCTTATACAACGACCAGTTCCATCTCCAGATCGGGGTGATGGCTCACAACGCCTACCTG
ATGCCGAGTTTGCGCCGCATCTTGATCGACCACGCCAGGCTCGGAAAAATCTTCTATCGGCATCCGACCACCAGCGACAT
GCAGGCGGATCTCGGCAAAGCGGCCAGCCAGCACGACCAGATCATCGAGGCGATCGAGCGCCACGATGCAAACGCCGCCG
CTGACATCGTGCGCGCGCACATGGATCTGTCCCGTCGCCGGATGACGGAGTATGTCGCGCCTGCGGCTGTTGAGGTGCCG
CTGACGTACTGA

Upstream 100 bases:

>100_bases
ACAAGGACGGCATGGATGCAGCCGTTGCCGCTCAAGGCCTACGCGGCGGCCGTCGCCTCATGCTATAAAATGTCTACGAT
TGATAGACAAGGAAATGGAC

Downstream 100 bases:

>100_bases
GGTCGGGGCAGTTGCGTCGCCGCCGGCCTGACCGCCATGCATCGACGGCGATTTGAATGACCGGATGGAGGGCGACAAGG
GCCCTTCGCTGTCCTCCGCC

Product: transcription regulator protein

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein; Regulatory Protein; FCD Domain Protein; GntR-Family Transcriptional Regulator; Transcriptional Repressor MdcY; GntR Domain-Containing Protein; Mn-Dependent Transcriptional Regulator; GntR-Family Regulatory Protein; GntR-Like; GntR-Family Protein Transcriptional Regulator; Transcriptional Regulator MdcY Family Protein; Transcription Regulator Protein; GntR Domain Protein; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTRTKVAAESDAQVADPSVDRKALLSEALRRRIVSMEMAPGAVVDELALSEEFGLSRPPVREIMRQMAAEGYIDLEANRA
ARVSSMNHQSLRNFFLAAPLIYIATTQLAAVNAAQHEIDALKAIQLRFRQAIEDNDVESRVLYNDQFHLQIGVMAHNAYL
MPSLRRILIDHARLGKIFYRHPTTSDMQADLGKAASQHDQIIEAIERHDANAAADIVRAHMDLSRRRMTEYVAPAAVEVP
LTY

Sequences:

>Translated_243_residues
MTRTKVAAESDAQVADPSVDRKALLSEALRRRIVSMEMAPGAVVDELALSEEFGLSRPPVREIMRQMAAEGYIDLEANRA
ARVSSMNHQSLRNFFLAAPLIYIATTQLAAVNAAQHEIDALKAIQLRFRQAIEDNDVESRVLYNDQFHLQIGVMAHNAYL
MPSLRRILIDHARLGKIFYRHPTTSDMQADLGKAASQHDQIIEAIERHDANAAADIVRAHMDLSRRRMTEYVAPAAVEVP
LTY
>Mature_242_residues
TRTKVAAESDAQVADPSVDRKALLSEALRRRIVSMEMAPGAVVDELALSEEFGLSRPPVREIMRQMAAEGYIDLEANRAA
RVSSMNHQSLRNFFLAAPLIYIATTQLAAVNAAQHEIDALKAIQLRFRQAIEDNDVESRVLYNDQFHLQIGVMAHNAYLM
PSLRRILIDHARLGKIFYRHPTTSDMQADLGKAASQHDQIIEAIERHDANAAADIVRAHMDLSRRRMTEYVAPAAVEVPL
TY

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27214; Mature: 27083

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTKVAAESDAQVADPSVDRKALLSEALRRRIVSMEMAPGAVVDELALSEEFGLSRPPV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCH
REIMRQMAAEGYIDLEANRAARVSSMNHQSLRNFFLAAPLIYIATTQLAAVNAAQHEIDA
HHHHHHHHHCCCEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKAIQLRFRQAIEDNDVESRVLYNDQFHLQIGVMAHNAYLMPSLRRILIDHARLGKIFYR
HHHHHHHHHHHHCCCCCCCEEEECCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHEEE
HPTTSDMQADLGKAASQHDQIIEAIERHDANAAADIVRAHMDLSRRRMTEYVAPAAVEVP
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
LTY
CCC
>Mature Secondary Structure 
TRTKVAAESDAQVADPSVDRKALLSEALRRRIVSMEMAPGAVVDELALSEEFGLSRPPV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCH
REIMRQMAAEGYIDLEANRAARVSSMNHQSLRNFFLAAPLIYIATTQLAAVNAAQHEIDA
HHHHHHHHHCCCEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKAIQLRFRQAIEDNDVESRVLYNDQFHLQIGVMAHNAYLMPSLRRILIDHARLGKIFYR
HHHHHHHHHHHHCCCCCCCEEEECCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHEEE
HPTTSDMQADLGKAASQHDQIIEAIERHDANAAADIVRAHMDLSRRRMTEYVAPAAVEVP
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
LTY
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA