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The map label for this gene is ydfH [H]

Identifier: 17546836

GI number: 17546836

Start: 2293428

End: 2294180

Strand: Direct

Name: ydfH [H]

Synonym: RSc2117

Alternate gene names: 17546836

Gene position: 2293428-2294180 (Clockwise)

Preceding gene: 17546833

Following gene: 17546837

Centisome position: 61.71

GC content: 69.59

Gene sequence:

>753_bases
ATGTCCAAAAGTCTCAAGCTGGTCTCCACCGATGCGGCGTCGAAGTCGGGCGCGAAGGCGTCGGGCACAACGCGCATGCC
GGTCGAAGAGCGGATGTACCACGAGATCTACGATGCGATCATGGAACACCGCCTGCCGCCGCGCACCAAGCTGACGGAGC
ATGCGCTCTGCGAAATCTATGCCACCGCGCGCCATACCGTGCGCAAGGTGTTCTCCCGGCTGGCCGCTGACGGCCTGGTC
GACCTGGAGCCCAACCGCGGCGCCTTCATCGCCGCGCCGTCCATCGACGAAGCCCACGCCATGTTCGAGTTGCGCCAGAT
CCTGGAGCGCGCGGTGCTCGACAAGGTCGGCCGCAGCGCCAGCCCGAAGGCGGCCGTCGCGCCGCTGCTGGCGCGGGTCA
ACGAAGAGCGCCAGGCCTTCGTCAGCCACGATAGGCCGCGCTGGATCCGGCTGTCGGCCGAATTCCACGTGGCGCTGGCC
GAGCAGGCCGGCAACCCGCTGGTGGTGGAGATCATGCGCCGGCTGGTCTCGCGCACCACGCTGATGATCGCCAGCGTCGA
GGCGCCGGGCCACAACGCCTGCTCGTTCGACGAGCACCTCGACATCCTTCGCGCGCTCGAGCGCGGCGATGTCGGCGCCG
CGCAGGCGCACATGGCCCAGCACTTGCAATGCTGTGCCGACCGCGTCCGCCCGGAAGCGCCCGCGGACTTTGACCTGCGC
GCGGTGCTGGGCCGGGGCGACGCCCCCCTCTAG

Upstream 100 bases:

>100_bases
AACACATTTTGTTGACAATATTGGAGGCGTGATCGAATAATTGTCAACAGGTTTTCGCGGTCGCCCATGCTGCATCGCAC
TGTTCTCTAGCGGGTCTGCC

Downstream 100 bases:

>100_bases
CCACCCGGTTTTGCCGACCCGGCGAGCCGGCCCGACAGAGGCTGGCCGCCACCGGCCGGATGCCATCCGGCCCACCGCCA
CAAGGAGACCCCATGGCAAG

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSKSLKLVSTDAASKSGAKASGTTRMPVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIYATARHTVRKVFSRLAADGLV
DLEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGRSASPKAAVAPLLARVNEERQAFVSHDRPRWIRLSAEFHVALA
EQAGNPLVVEIMRRLVSRTTLMIASVEAPGHNACSFDEHLDILRALERGDVGAAQAHMAQHLQCCADRVRPEAPADFDLR
AVLGRGDAPL

Sequences:

>Translated_250_residues
MSKSLKLVSTDAASKSGAKASGTTRMPVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIYATARHTVRKVFSRLAADGLV
DLEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGRSASPKAAVAPLLARVNEERQAFVSHDRPRWIRLSAEFHVALA
EQAGNPLVVEIMRRLVSRTTLMIASVEAPGHNACSFDEHLDILRALERGDVGAAQAHMAQHLQCCADRVRPEAPADFDLR
AVLGRGDAPL
>Mature_249_residues
SKSLKLVSTDAASKSGAKASGTTRMPVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIYATARHTVRKVFSRLAADGLVD
LEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGRSASPKAAVAPLLARVNEERQAFVSHDRPRWIRLSAEFHVALAE
QAGNPLVVEIMRRLVSRTTLMIASVEAPGHNACSFDEHLDILRALERGDVGAAQAHMAQHLQCCADRVRPEAPADFDLRA
VLGRGDAPL

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=207, Percent_Identity=26.5700483091787, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27538; Mature: 27407

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSLKLVSTDAASKSGAKASGTTRMPVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIY
CCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ATARHTVRKVFSRLAADGLVDLEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGRSA
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
SPKAAVAPLLARVNEERQAFVSHDRPRWIRLSAEFHVALAEQAGNPLVVEIMRRLVSRTT
CCHHHHHHHHHHHCHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LMIASVEAPGHNACSFDEHLDILRALERGDVGAAQAHMAQHLQCCADRVRPEAPADFDLR
HHEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
AVLGRGDAPL
HHHCCCCCCC
>Mature Secondary Structure 
SKSLKLVSTDAASKSGAKASGTTRMPVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIY
CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ATARHTVRKVFSRLAADGLVDLEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGRSA
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
SPKAAVAPLLARVNEERQAFVSHDRPRWIRLSAEFHVALAEQAGNPLVVEIMRRLVSRTT
CCHHHHHHHHHHHCHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LMIASVEAPGHNACSFDEHLDILRALERGDVGAAQAHMAQHLQCCADRVRPEAPADFDLR
HHEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
AVLGRGDAPL
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]