| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is ybbP [H]
Identifier: 17546810
GI number: 17546810
Start: 2261495
End: 2264026
Strand: Reverse
Name: ybbP [H]
Synonym: RSc2091
Alternate gene names: 17546810
Gene position: 2264026-2261495 (Counterclockwise)
Preceding gene: 17546811
Following gene: 17546809
Centisome position: 60.92
GC content: 71.96
Gene sequence:
>2532_bases ATGTCCCGTTTTTCCATCACCGCCCAGTCGCTGCGCATGCTGAGCCGCGACTGGCGCGCGGGCGAACTGAACCTGCTGCT GATCGCGCTCGTGCTGGCCGTGGCCGCGCTGGCCTCGGTCAGCTTCCTCGCCGATCGCATGCACGCCGGGCTGGAGCACG ATGCCCGCCAACTGCTCGGCGCCGACGTGGTGGTGGTCTCCGATCTGCCGTTGCCGCCGGATATCGAGGCGCATGCCGCA TCGAGCGGCCTGCGCGTCTCGCATACGGCCACCTTCCCCAGCATGGCCAGCGCCCTGGCGGCCGGTGCCTCGGGCGAGCC CGCGTCGCAGCTGGCGGCGGTCAAGGCGGTGGACGCCGGCTATCCGCTGCGCGGCACCGTCAAGGTGAGCACGGCGCGCG AAGCCGCGGGGGCGCCCGTCCACACGATTCCGGAAGCGGGCACGGTGTGGGTCGATCCCCCCTTGCTGGAGGCGCTGGGC GTGCGCGTGGGCGAGGCCATCCGGCTCGGCACGCGCACCTTCAGGATCACGCGGGTCATCACCCAGGAGCTGGATCGCGG CGCCGGTTTCATGAACTTCGCGCCGCGCGTGATGCTGCCCATGGCCGACCTGCCGTCCACCGGCCTGGTCACCTTCGGCA GCCGCGTGACCTACCGTCTGCTGGTGGCCGGCCCCGACGCCGCCACCGCCGCCTTCCACGCCTGGGCCGAGCATGAGCTG CAGGCGCGCCATCTGCGCGGTGTGCGCATCGAGTCGCTGCAGAACGGCCAGCCCCAGATGCGTGAGACGCTGGACCGCGC CGAGCGCTTCCTCTCCCTCGTCGCCCTGCTGGCGGCGATGATCGCGGCGGTGGCGATCACCATGGCGGCGCGGCGCTACA CCGCGCGGCATACCGATGCGGTGGCCATCATCAAATGCCTGGGGCTGCGTCAGGGCCAGATTCTCGGCCTCTTCGCGCTG GAGTTCCTGGCGGTCGGCGTGATCGGCTCGGCGGTGGGCGTGGCGTTGGGCTACGGCGCGCACTGGCTGCTGGTGGCGTC GCTGGGCAGCCTGGTGACGGTGTCGCTGCCGGCGCCGTCGGCATGGCCGGCGCTGGTCGGCGTGGCGGCGGGGCTGGTGC TGCTGGTGGGCTTTGCCGTGCCGCCGCTGCTGAGCCTGGTGCGCGTGGCGCCGCTGCGGGTGCTGCGGCGCGATGCCGGC GAGCGCGCCATCGCCACCTGGGTCGGCTATGCGCTGGGCTCGGCGGCGTTCTTTGCGCTGCTGGTGGTGTCGGCGCGCGA TCTCAAGCTGGGCGCGCTGACCGCGGCCGGGTTTGGCGCCGCCATCGTGGTCTTCGCGCTGATGGCCGCGGGCGGCCTGC GGGCCCTGGCGGCATCGCTCGGCCGGGCGCGCGCGCTGGCGGTAGGCTGGCGCTTCGCGCTGGCCGTGCTGGAGCGTCGC CGCGGCGTGAGCGTGCTGCAGACGGTTTCGCTCGCGGTCGGGCTGATGGCGCTGCTGCTGCTCGCCATGACGCGCAACGA CCTGATCCGTTCGTGGCACAACGCCACGCCGGCCGATGCGCCCAACCGCTTCATCATCAACATCCAGCCCGACCAGGTGG CGCCGGTGTCGCAGGCGCTGGCGCAGGCGGGCGTGGTGCAGCCCAGGCTGTATCCGATGGTGCGCGGCCGCCTGACGCAG GTGAACGGCCAGGCCATCGGTCGCGATTCCTATGCCGAGTCGCGCGCGCGCAACCTGGTCGAGCGCGAGTTCAACCTGTC CTACGCCGCCGCCCAGCCGCCCGAGAACCGCATCATCGCCGGGCAGTGGTTCAGCGGCCAGCGGCCCGAGGCGTCGGTGG AGGAGGGGATCGCCAAGACGCTCAACCTGCGCCTGGGCGATGTGCTGCGCTTCGACGTCGCCGGGCAGACGGTGGATGCG CCCATCACCTCGCTGCGCAAGCTCGATTGGAGCTCGATGCGCGTGAATTTCTTCGTGATCCTGCCGCCGGTGGCGCTGCG CGACATGCCGCAGACCTACGTGACGGCATTCCGCATTCCCGCGGGCCGCGCCGATCTGCCCGCCAGGCTGGTGCAGGCGT TTCCGAACCTGACGGTGGTCGACACCGAACTGATCCTGCAGCAGGTGCAGGACGTGCTGGACCAGGTGACGGCGGCGGTG GAGTGCCTCTTCGTCTTTACGCTGGCGGCCGGCGTGCTGGTGCTGTACGCGGCGCTGTCCGGCTCGCGCGACGAGCGCCT GCGCGATGCCGGCGTGCTGCGCGCGCTGGGCGCGGGTTCGGCCGTGGTGCGGCAGACGCAATATGCCGAGGTGCTGATCG TCGGCGGACTGGCCGGCCTGATGGCGAGCGCTGGCGCCATCGCCATCGGCTGGGTGCTGTCGGCGCAGGTGTTCGATTTC CCGTATCGTTTCAACCCGGCGATCCTGCCGGTGGGCATCGCGGCCGGTATGCTATGCGCCTTCGCGGGCGGCTGGCTGGG CCTGCGCGAGGTGCTGCGGCGCCCGGCCATGGCCACGCTGCGCGATGCCTGA
Upstream 100 bases:
>100_bases GCGCTGCCCTGGCACGCCGACGAGCCCCGGGCGGCCGCGCGGTAACTCGTGCGAACATGGCGGGTATCGCGCGGGCCCGC GCTTTCTACCCGTCCTGTCC
Downstream 100 bases:
>100_bases ACCAACGACCGACCGATGTGATGCTGTATGACTGACGCTGCTTCCGGCCAGGAAACCCTGGCCTTCGACCTGCTCGGCGG CGAGGCGCGCGTGCGCGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 843; Mature: 842
Protein sequence:
>843_residues MSRFSITAQSLRMLSRDWRAGELNLLLIALVLAVAALASVSFLADRMHAGLEHDARQLLGADVVVVSDLPLPPDIEAHAA SSGLRVSHTATFPSMASALAAGASGEPASQLAAVKAVDAGYPLRGTVKVSTAREAAGAPVHTIPEAGTVWVDPPLLEALG VRVGEAIRLGTRTFRITRVITQELDRGAGFMNFAPRVMLPMADLPSTGLVTFGSRVTYRLLVAGPDAATAAFHAWAEHEL QARHLRGVRIESLQNGQPQMRETLDRAERFLSLVALLAAMIAAVAITMAARRYTARHTDAVAIIKCLGLRQGQILGLFAL EFLAVGVIGSAVGVALGYGAHWLLVASLGSLVTVSLPAPSAWPALVGVAAGLVLLVGFAVPPLLSLVRVAPLRVLRRDAG ERAIATWVGYALGSAAFFALLVVSARDLKLGALTAAGFGAAIVVFALMAAGGLRALAASLGRARALAVGWRFALAVLERR RGVSVLQTVSLAVGLMALLLLAMTRNDLIRSWHNATPADAPNRFIINIQPDQVAPVSQALAQAGVVQPRLYPMVRGRLTQ VNGQAIGRDSYAESRARNLVEREFNLSYAAAQPPENRIIAGQWFSGQRPEASVEEGIAKTLNLRLGDVLRFDVAGQTVDA PITSLRKLDWSSMRVNFFVILPPVALRDMPQTYVTAFRIPAGRADLPARLVQAFPNLTVVDTELILQQVQDVLDQVTAAV ECLFVFTLAAGVLVLYAALSGSRDERLRDAGVLRALGAGSAVVRQTQYAEVLIVGGLAGLMASAGAIAIGWVLSAQVFDF PYRFNPAILPVGIAAGMLCAFAGGWLGLREVLRRPAMATLRDA
Sequences:
>Translated_843_residues MSRFSITAQSLRMLSRDWRAGELNLLLIALVLAVAALASVSFLADRMHAGLEHDARQLLGADVVVVSDLPLPPDIEAHAA SSGLRVSHTATFPSMASALAAGASGEPASQLAAVKAVDAGYPLRGTVKVSTAREAAGAPVHTIPEAGTVWVDPPLLEALG VRVGEAIRLGTRTFRITRVITQELDRGAGFMNFAPRVMLPMADLPSTGLVTFGSRVTYRLLVAGPDAATAAFHAWAEHEL QARHLRGVRIESLQNGQPQMRETLDRAERFLSLVALLAAMIAAVAITMAARRYTARHTDAVAIIKCLGLRQGQILGLFAL EFLAVGVIGSAVGVALGYGAHWLLVASLGSLVTVSLPAPSAWPALVGVAAGLVLLVGFAVPPLLSLVRVAPLRVLRRDAG ERAIATWVGYALGSAAFFALLVVSARDLKLGALTAAGFGAAIVVFALMAAGGLRALAASLGRARALAVGWRFALAVLERR RGVSVLQTVSLAVGLMALLLLAMTRNDLIRSWHNATPADAPNRFIINIQPDQVAPVSQALAQAGVVQPRLYPMVRGRLTQ VNGQAIGRDSYAESRARNLVEREFNLSYAAAQPPENRIIAGQWFSGQRPEASVEEGIAKTLNLRLGDVLRFDVAGQTVDA PITSLRKLDWSSMRVNFFVILPPVALRDMPQTYVTAFRIPAGRADLPARLVQAFPNLTVVDTELILQQVQDVLDQVTAAV ECLFVFTLAAGVLVLYAALSGSRDERLRDAGVLRALGAGSAVVRQTQYAEVLIVGGLAGLMASAGAIAIGWVLSAQVFDF PYRFNPAILPVGIAAGMLCAFAGGWLGLREVLRRPAMATLRDA >Mature_842_residues SRFSITAQSLRMLSRDWRAGELNLLLIALVLAVAALASVSFLADRMHAGLEHDARQLLGADVVVVSDLPLPPDIEAHAAS SGLRVSHTATFPSMASALAAGASGEPASQLAAVKAVDAGYPLRGTVKVSTAREAAGAPVHTIPEAGTVWVDPPLLEALGV RVGEAIRLGTRTFRITRVITQELDRGAGFMNFAPRVMLPMADLPSTGLVTFGSRVTYRLLVAGPDAATAAFHAWAEHELQ ARHLRGVRIESLQNGQPQMRETLDRAERFLSLVALLAAMIAAVAITMAARRYTARHTDAVAIIKCLGLRQGQILGLFALE FLAVGVIGSAVGVALGYGAHWLLVASLGSLVTVSLPAPSAWPALVGVAAGLVLLVGFAVPPLLSLVRVAPLRVLRRDAGE RAIATWVGYALGSAAFFALLVVSARDLKLGALTAAGFGAAIVVFALMAAGGLRALAASLGRARALAVGWRFALAVLERRR GVSVLQTVSLAVGLMALLLLAMTRNDLIRSWHNATPADAPNRFIINIQPDQVAPVSQALAQAGVVQPRLYPMVRGRLTQV NGQAIGRDSYAESRARNLVEREFNLSYAAAQPPENRIIAGQWFSGQRPEASVEEGIAKTLNLRLGDVLRFDVAGQTVDAP ITSLRKLDWSSMRVNFFVILPPVALRDMPQTYVTAFRIPAGRADLPARLVQAFPNLTVVDTELILQQVQDVLDQVTAAVE CLFVFTLAAGVLVLYAALSGSRDERLRDAGVLRALGAGSAVVRQTQYAEVLIVGGLAGLMASAGAIAIGWVLSAQVFDFP YRFNPAILPVGIAAGMLCAFAGGWLGLREVLRRPAMATLRDA
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=823, Percent_Identity=33.4143377885784, Blast_Score=357, Evalue=1e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 89253; Mature: 89122
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: PS00651 RIBOSOMAL_L9
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRFSITAQSLRMLSRDWRAGELNLLLIALVLAVAALASVSFLADRMHAGLEHDARQLLG CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC ADVVVVSDLPLPPDIEAHAASSGLRVSHTATFPSMASALAAGASGEPASQLAAVKAVDAG CCEEEEECCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCC YPLRGTVKVSTAREAAGAPVHTIPEAGTVWVDPPLLEALGVRVGEAIRLGTRTFRITRVI CCCCEEEEEECHHHHCCCCCEECCCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHH TQELDRGAGFMNFAPRVMLPMADLPSTGLVTFGSRVTYRLLVAGPDAATAAFHAWAEHEL HHHHHCCCCCHHCCCHHEEECCCCCCCCCEEECCCEEEEEEEECCCHHHHHHHHHHHHHH QARHLRGVRIESLQNGQPQMRETLDRAERFLSLVALLAAMIAAVAITMAARRYTARHTDA HHHHHCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH VAIIKCLGLRQGQILGLFALEFLAVGVIGSAVGVALGYGAHWLLVASLGSLVTVSLPAPS HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCC AWPALVGVAAGLVLLVGFAVPPLLSLVRVAPLRVLRRDAGERAIATWVGYALGSAAFFAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LVVSARDLKLGALTAAGFGAAIVVFALMAAGGLRALAASLGRARALAVGWRFALAVLERR HHHHHCCCEEEEEHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGVSVLQTVSLAVGLMALLLLAMTRNDLIRSWHNATPADAPNRFIINIQPDQVAPVSQAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHH AQAGVVQPRLYPMVRGRLTQVNGQAIGRDSYAESRARNLVEREFNLSYAAAQPPENRIIA HHCCCCCCHHHHHHHCHHEECCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCEEE GQWFSGQRPEASVEEGIAKTLNLRLGDVLRFDVAGQTVDAPITSLRKLDWSSMRVNFFVI ECCCCCCCCCCHHHHHHHHHHHCHHCCEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEE LPPVALRDMPQTYVTAFRIPAGRADLPARLVQAFPNLTVVDTELILQQVQDVLDQVTAAV ECCHHHHCCCHHHHHHEECCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH ECLFVFTLAAGVLVLYAALSGSRDERLRDAGVLRALGAGSAVVRQTQYAEVLIVGGLAGL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEHHHHHH MASAGAIAIGWVLSAQVFDFPYRFNPAILPVGIAAGMLCAFAGGWLGLREVLRRPAMATL HHCCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHH RDA CCC >Mature Secondary Structure SRFSITAQSLRMLSRDWRAGELNLLLIALVLAVAALASVSFLADRMHAGLEHDARQLLG CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC ADVVVVSDLPLPPDIEAHAASSGLRVSHTATFPSMASALAAGASGEPASQLAAVKAVDAG CCEEEEECCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCC YPLRGTVKVSTAREAAGAPVHTIPEAGTVWVDPPLLEALGVRVGEAIRLGTRTFRITRVI CCCCEEEEEECHHHHCCCCCEECCCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHH TQELDRGAGFMNFAPRVMLPMADLPSTGLVTFGSRVTYRLLVAGPDAATAAFHAWAEHEL HHHHHCCCCCHHCCCHHEEECCCCCCCCCEEECCCEEEEEEEECCCHHHHHHHHHHHHHH QARHLRGVRIESLQNGQPQMRETLDRAERFLSLVALLAAMIAAVAITMAARRYTARHTDA HHHHHCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH VAIIKCLGLRQGQILGLFALEFLAVGVIGSAVGVALGYGAHWLLVASLGSLVTVSLPAPS HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCC AWPALVGVAAGLVLLVGFAVPPLLSLVRVAPLRVLRRDAGERAIATWVGYALGSAAFFAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LVVSARDLKLGALTAAGFGAAIVVFALMAAGGLRALAASLGRARALAVGWRFALAVLERR HHHHHCCCEEEEEHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGVSVLQTVSLAVGLMALLLLAMTRNDLIRSWHNATPADAPNRFIINIQPDQVAPVSQAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHH AQAGVVQPRLYPMVRGRLTQVNGQAIGRDSYAESRARNLVEREFNLSYAAAQPPENRIIA HHCCCCCCHHHHHHHCHHEECCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCEEE GQWFSGQRPEASVEEGIAKTLNLRLGDVLRFDVAGQTVDAPITSLRKLDWSSMRVNFFVI ECCCCCCCCCCHHHHHHHHHHHCHHCCEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEE LPPVALRDMPQTYVTAFRIPAGRADLPARLVQAFPNLTVVDTELILQQVQDVLDQVTAAV ECCHHHHCCCHHHHHHEECCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH ECLFVFTLAAGVLVLYAALSGSRDERLRDAGVLRALGAGSAVVRQTQYAEVLIVGGLAGL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEHHHHHH MASAGAIAIGWVLSAQVFDFPYRFNPAILPVGIAAGMLCAFAGGWLGLREVLRRPAMATL HHCCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHH RDA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]