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The map label for this gene is psd [H]

Identifier: 17546793

GI number: 17546793

Start: 2247468

End: 2248115

Strand: Reverse

Name: psd [H]

Synonym: RSc2074

Alternate gene names: 17546793

Gene position: 2248115-2247468 (Counterclockwise)

Preceding gene: 17546794

Following gene: 17546792

Centisome position: 60.49

GC content: 66.98

Gene sequence:

>648_bases
TTGAACAACACGTATCCGCACCCCATCATCGCGCGCGAGGGCTGGCCGTACCTGGGCGGGATCTTCATCGTCACGCTCAT
CGTCCATGCCGCCGCCGGACTTGGCTGGGCGTGGCCGTTCTGGTTGCTGACGGTGTTCGTGCTGCAGTTTTTCCGCGATC
CGGCGCGCACGGTGCCGACGCAGGCCAATGCCATTCTGTCGCCCGCGGATGGCCGCATCGTCGCTGTCGAGCAGGTGCGC
GATCCGTACGCTGACCGCGATGCGCTGAAGATCAGCGTGTTCATGAACGTGTTCAACGTGCACTCCAACCGCGCGCCGGT
CGACGGCACCGTGCAGCAGGTGCAGTACTTCCCCGGCAAGTTCGTCAACGCCGACCTGGACAAGGCCTCGCTCGAGAACG
AGCGCAACGCCGTGGTGCTGCGCCGCGCCGACGGCCAGGTCGTCACGTCGGTGCAGGTGGCCGGGTTGATCGCACGCCGC
ATCCTTTGCTATACCAAAGTCGGCGAGACGCTCGCGCGCGGCCAGCGCTACGGCTTCATCCGCTTCGGCTCGCGCGTCGA
CGTGTACCTGCCGCTCACGGCGCGCCCGCGCGTGACCATCGGCGAGAAGGTGTCCGCCACGCTGACGGTGCTCGCCGAGC
TGGACTGA

Upstream 100 bases:

>100_bases
ATGCTGGCCGACGCCGATTGCGGGATGCCCGCGGTGCTGGCGCCGCCGTGTGTCGGCTAGAATGCCGCATTTCCTTCACG
ACGCATCCCGAGGTCTGATT

Downstream 100 bases:

>100_bases
CCCGGAGGCCATCATGCCCGCGTTCAACCGGCGCAAGAAGCGCTTTACCGCCAGCAACGTGATGCACCTGCGTCCGTTGC
GCCACAACCAGCCGCGCTCG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNNTYPHPIIAREGWPYLGGIFIVTLIVHAAAGLGWAWPFWLLTVFVLQFFRDPARTVPTQANAILSPADGRIVAVEQVR
DPYADRDALKISVFMNVFNVHSNRAPVDGTVQQVQYFPGKFVNADLDKASLENERNAVVLRRADGQVVTSVQVAGLIARR
ILCYTKVGETLARGQRYGFIRFGSRVDVYLPLTARPRVTIGEKVSATLTVLAELD

Sequences:

>Translated_215_residues
MNNTYPHPIIAREGWPYLGGIFIVTLIVHAAAGLGWAWPFWLLTVFVLQFFRDPARTVPTQANAILSPADGRIVAVEQVR
DPYADRDALKISVFMNVFNVHSNRAPVDGTVQQVQYFPGKFVNADLDKASLENERNAVVLRRADGQVVTSVQVAGLIARR
ILCYTKVGETLARGQRYGFIRFGSRVDVYLPLTARPRVTIGEKVSATLTVLAELD
>Mature_215_residues
MNNTYPHPIIAREGWPYLGGIFIVTLIVHAAAGLGWAWPFWLLTVFVLQFFRDPARTVPTQANAILSPADGRIVAVEQVR
DPYADRDALKISVFMNVFNVHSNRAPVDGTVQQVQYFPGKFVNADLDKASLENERNAVVLRRADGQVVTSVQVAGLIARR
ILCYTKVGETLARGQRYGFIRFGSRVDVYLPLTARPRVTIGEKVSATLTVLAELD

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 23868; Mature: 23868

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTYPHPIIAREGWPYLGGIFIVTLIVHAAAGLGWAWPFWLLTVFVLQFFRDPARTVPT
CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCC
QANAILSPADGRIVAVEQVRDPYADRDALKISVFMNVFNVHSNRAPVDGTVQQVQYFPGK
CCCEEECCCCCCEEEHHHHCCCCCCCCCEEHHEEHHHHHHCCCCCCCCHHHHHHHHCCCC
FVNADLDKASLENERNAVVLRRADGQVVTSVQVAGLIARRILCYTKVGETLARGQRYGFI
CCCCCCCHHHCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
RFGSRVDVYLPLTARPRVTIGEKVSATLTVLAELD
EECCEEEEEEECCCCCCEEECCCCEEEEEEEEECC
>Mature Secondary Structure
MNNTYPHPIIAREGWPYLGGIFIVTLIVHAAAGLGWAWPFWLLTVFVLQFFRDPARTVPT
CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCC
QANAILSPADGRIVAVEQVRDPYADRDALKISVFMNVFNVHSNRAPVDGTVQQVQYFPGK
CCCEEECCCCCCEEEHHHHCCCCCCCCCEEHHEEHHHHHHCCCCCCCCHHHHHHHHCCCC
FVNADLDKASLENERNAVVLRRADGQVVTSVQVAGLIARRILCYTKVGETLARGQRYGFI
CCCCCCCHHHCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
RFGSRVDVYLPLTARPRVTIGEKVSATLTVLAELD
EECCEEEEEEECCCCCCEEECCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA