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The map label for this gene is ydeM [H]

Identifier: 17546762

GI number: 17546762

Start: 2216600

End: 2217070

Strand: Reverse

Name: ydeM [H]

Synonym: RSc2043

Alternate gene names: 17546762

Gene position: 2217070-2216600 (Counterclockwise)

Preceding gene: 17546763

Following gene: 17546761

Centisome position: 59.66

GC content: 66.03

Gene sequence:

>471_bases
ATGACGGAAGCAGCGTTGCCGTACACGTTCTATTTCGACGATTTCCAGGTCGGCCAGACGATGGAGATGGGCACCTACGC
GGTGACCGAGGACGAGATCCTGGCCTTCGCCCGGCAGTACGACCCGCAGCCGTTTCATGTCGACCCGGAGGCGGCCCGGC
GCAGCATCTACGGCGGCCTCATTTCCAGCGGCTGGATGACCTGCGCGGTGATGATGCGGCTGATGGTGCAGAACTTTCTC
AGCAAGTCGTCCAGCATGGGTTCGCCGGGCGTGGACGAGATCCGTTGGCTCAGGCCGGTGTATCCGGGTGATACGCTGTC
GGTGTCGAGCACCTGCCTGGAGGTGCGGCCGTCGCAGTCCAAGCCCGACCGCGGCGTGGCGATCAACCGCTGGGAAGCGC
GCAACCAGCACGGCGAGCTGGTCTGCACCCTGGTCGGCATGGGTCTGTTCGGCCGCCGCCCGGCCGCCTGA

Upstream 100 bases:

>100_bases
ACGCCGCGTGATGCCACCCGGCGCGCCCCGCGCAGCCGCGGGGCGCTGTTTTTTTGAGCGGCCGCGCCCGCGCAGCGGAG
GCGGCGATGGAGGAGACGCC

Downstream 100 bases:

>100_bases
ACCGGGTCACGAGGAGACTGCCAACGATGCGTGTCATCGAATCGCTCGACGCGCTGCGGGGATTGATCGGCCAGGAGGTC
GCGGTCAGCGACTGGGTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTEAALPYTFYFDDFQVGQTMEMGTYAVTEDEILAFARQYDPQPFHVDPEAARRSIYGGLISSGWMTCAVMMRLMVQNFL
SKSSSMGSPGVDEIRWLRPVYPGDTLSVSSTCLEVRPSQSKPDRGVAINRWEARNQHGELVCTLVGMGLFGRRPAA

Sequences:

>Translated_156_residues
MTEAALPYTFYFDDFQVGQTMEMGTYAVTEDEILAFARQYDPQPFHVDPEAARRSIYGGLISSGWMTCAVMMRLMVQNFL
SKSSSMGSPGVDEIRWLRPVYPGDTLSVSSTCLEVRPSQSKPDRGVAINRWEARNQHGELVCTLVGMGLFGRRPAA
>Mature_155_residues
TEAALPYTFYFDDFQVGQTMEMGTYAVTEDEILAFARQYDPQPFHVDPEAARRSIYGGLISSGWMTCAVMMRLMVQNFLS
KSSSMGSPGVDEIRWLRPVYPGDTLSVSSTCLEVRPSQSKPDRGVAINRWEARNQHGELVCTLVGMGLFGRRPAA

Specific function: Phenylacetic acid aerobic catabolism. [C]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 17411; Mature: 17280

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEAALPYTFYFDDFQVGQTMEMGTYAVTEDEILAFARQYDPQPFHVDPEAARRSIYGGL
CCCCCCCEEEEECCCCCCCEECCCEEEECHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH
ISSGWMTCAVMMRLMVQNFLSKSSSMGSPGVDEIRWLRPVYPGDTLSVSSTCLEVRPSQS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCC
KPDRGVAINRWEARNQHGELVCTLVGMGLFGRRPAA
CCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
TEAALPYTFYFDDFQVGQTMEMGTYAVTEDEILAFARQYDPQPFHVDPEAARRSIYGGL
CCCCCCEEEEECCCCCCCEECCCEEEECHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH
ISSGWMTCAVMMRLMVQNFLSKSSSMGSPGVDEIRWLRPVYPGDTLSVSSTCLEVRPSQS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCC
KPDRGVAINRWEARNQHGELVCTLVGMGLFGRRPAA
CCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]