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The map label for this gene is 17546744

Identifier: 17546744

GI number: 17546744

Start: 2202067

End: 2203008

Strand: Reverse

Name: 17546744

Synonym: RSc2025

Alternate gene names: NA

Gene position: 2203008-2202067 (Counterclockwise)

Preceding gene: 17546746

Following gene: 17546743

Centisome position: 59.28

GC content: 60.3

Gene sequence:

>942_bases
ATGGCGTACAAATCCATTGGTTACCATAGCTCGATGCCGAAAGAGAAATTGGCGAGTTTCAGGCGCGAATTCAGCGCGAG
AAATCATTGGCTCGCCCTGCTGTATGTCATATGCGTGCCGGCGAGCATGCTCGTGGGCGGCTACATGGCCTGGTCATTCT
CGGTCGATGGGAGCCTCGGGGCCGCCCGCTGGGTCATGGAAGCGGTGGTGTGCATCTTCTTCGCTCGCCAGCTGCGGGCC
ATGGAAAACATCGTTCACTTCGGCAGCCATCTGAACATCACCAGCAAGCGCAGCGTGAATGACGCCATCGTCAACGCCGT
CGCGGCCGTTCCGACCTTCCAGTGGGTGCAGCGATACCGGGTGTTCCACAACAAGCACCACGTGCTGTTCGGTGGTGACG
ACGATCCCTGCAAGAACCGGATCGAGGCGATCAACGGCATCCGCGATCGCGTCGAGTCGCGGCAGCTCGGGCTGGTTTCC
GGAATCGTCTACGGCATCTATTCGTTCTATCGGGAAGTGGGGTCGAACCGGACGATCCTGCTCTATTCGCTGCTCTATCA
CGCGGCGGCCTATTTCGCCATGAATGCGCTGAACCCGGAGTTCGCCGGCTTCTTCTACGGCCACCTGCTGGTTGCGGGCC
TGCTGGTCCTGCCGTGCCTGCGGCTGGTCGCCGAATGGTCCGAGCATGACTACGCCGCCTCGGACACGGAAGCCCAGGCG
ACGTTCAACAACTGCTCGTTTGTCGACAAGCTGATCTTTCATCCGGCCGGCGATGCCTATCACCTGCTGCATCACCTGTA
TCCTGCGATCCCCTGGTGGCGCCAGGGAGCGGCGCACCGATATCTGATGGCCGAAGACTACAACTACCGCACCTTGATGC
ACCGGGCCGATTTCTTCCAGCGCCTCGCCATCGCGCAACACGACATGTCCGAAGCAAAATGA

Upstream 100 bases:

>100_bases
GCCATGGCACAAGTTCGTGGCGCGGTCTGTCCGCTTGGGCGCGCGGGTCGTTTCGGCGATTTCGCTGATGTTTGGATCGA
TTTGAAAAATAGGAGAACGC

Downstream 100 bases:

>100_bases
ACGCAGCAACCCAAGGATTGATTCTCGGTTTCTCCCTGATCCTGGCCATCGGATCGCAGAATGCCTTCATCTTGCGGCAG
GGCATCCTGGGCCGGCATGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAYKSIGYHSSMPKEKLASFRREFSARNHWLALLYVICVPASMLVGGYMAWSFSVDGSLGAARWVMEAVVCIFFARQLRA
MENIVHFGSHLNITSKRSVNDAIVNAVAAVPTFQWVQRYRVFHNKHHVLFGGDDDPCKNRIEAINGIRDRVESRQLGLVS
GIVYGIYSFYREVGSNRTILLYSLLYHAAAYFAMNALNPEFAGFFYGHLLVAGLLVLPCLRLVAEWSEHDYAASDTEAQA
TFNNCSFVDKLIFHPAGDAYHLLHHLYPAIPWWRQGAAHRYLMAEDYNYRTLMHRADFFQRLAIAQHDMSEAK

Sequences:

>Translated_313_residues
MAYKSIGYHSSMPKEKLASFRREFSARNHWLALLYVICVPASMLVGGYMAWSFSVDGSLGAARWVMEAVVCIFFARQLRA
MENIVHFGSHLNITSKRSVNDAIVNAVAAVPTFQWVQRYRVFHNKHHVLFGGDDDPCKNRIEAINGIRDRVESRQLGLVS
GIVYGIYSFYREVGSNRTILLYSLLYHAAAYFAMNALNPEFAGFFYGHLLVAGLLVLPCLRLVAEWSEHDYAASDTEAQA
TFNNCSFVDKLIFHPAGDAYHLLHHLYPAIPWWRQGAAHRYLMAEDYNYRTLMHRADFFQRLAIAQHDMSEAK
>Mature_312_residues
AYKSIGYHSSMPKEKLASFRREFSARNHWLALLYVICVPASMLVGGYMAWSFSVDGSLGAARWVMEAVVCIFFARQLRAM
ENIVHFGSHLNITSKRSVNDAIVNAVAAVPTFQWVQRYRVFHNKHHVLFGGDDDPCKNRIEAINGIRDRVESRQLGLVSG
IVYGIYSFYREVGSNRTILLYSLLYHAAAYFAMNALNPEFAGFFYGHLLVAGLLVLPCLRLVAEWSEHDYAASDTEAQAT
FNNCSFVDKLIFHPAGDAYHLLHHLYPAIPWWRQGAAHRYLMAEDYNYRTLMHRADFFQRLAIAQHDMSEAK

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35726; Mature: 35595

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYKSIGYHSSMPKEKLASFRREFSARNHWLALLYVICVPASMLVGGYMAWSFSVDGSLG
CCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHH
AARWVMEAVVCIFFARQLRAMENIVHFGSHLNITSKRSVNDAIVNAVAAVPTFQWVQRYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VFHNKHHVLFGGDDDPCKNRIEAINGIRDRVESRQLGLVSGIVYGIYSFYREVGSNRTIL
HHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LYSLLYHAAAYFAMNALNPEFAGFFYGHLLVAGLLVLPCLRLVAEWSEHDYAASDTEAQA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
TFNNCSFVDKLIFHPAGDAYHLLHHLYPAIPWWRQGAAHRYLMAEDYNYRTLMHRADFFQ
HHCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHH
RLAIAQHDMSEAK
HHHHHHHHHHCCC
>Mature Secondary Structure 
AYKSIGYHSSMPKEKLASFRREFSARNHWLALLYVICVPASMLVGGYMAWSFSVDGSLG
CCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHH
AARWVMEAVVCIFFARQLRAMENIVHFGSHLNITSKRSVNDAIVNAVAAVPTFQWVQRYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VFHNKHHVLFGGDDDPCKNRIEAINGIRDRVESRQLGLVSGIVYGIYSFYREVGSNRTIL
HHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LYSLLYHAAAYFAMNALNPEFAGFFYGHLLVAGLLVLPCLRLVAEWSEHDYAASDTEAQA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
TFNNCSFVDKLIFHPAGDAYHLLHHLYPAIPWWRQGAAHRYLMAEDYNYRTLMHRADFFQ
HHCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHH
RLAIAQHDMSEAK
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA