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The map label for this gene is cyoD2 [H]

Identifier: 17546580

GI number: 17546580

Start: 2045245

End: 2045622

Strand: Direct

Name: cyoD2 [H]

Synonym: RSc1861

Alternate gene names: 17546580

Gene position: 2045245-2045622 (Clockwise)

Preceding gene: 17546579

Following gene: 17546581

Centisome position: 55.03

GC content: 70.37

Gene sequence:

>378_bases
ATGAAGCCGTCCCACCTCCACTGCGTGCACGCCGGCGAGACCGCGCCGCACGGCAGCCTGCGCGGCTACACCGTCGGCCT
GCTGCTATCGGTTGCGCTCACGCTCGCCGCGTTCGCGACCGTGATGACGGGCGCGCTGCCCGCCCGCCTCGCGCTCGCCG
GCATGGTGGGCCTGTGTGTGGCGCAGCTGCTGGTGCAGCTGGTGTATTTCCTCCACCTGGGCACCGGCCCGGGGCAGCGC
GGCAATACGGCGATCTTCGTCTGCACCGGCCTGCTGATCGCCATCGTCGTGGCGGGCTCCCTGTGGGTCATGCACAACGC
CAACGAGAACATGATGCCGACCGACATGTCGGTCGAGCGGGCACGCGCGCGCGACTAG

Upstream 100 bases:

>100_bases
GCGTCGTGCGCCGCCGGCTCGCCTGCCTGAGCCTGTTCTGGCACTTCCTGGACCTGGTCTGGATCTGCGTGTTCACCTTC
GTCTATCTGCGGGAGTTCGC

Downstream 100 bases:

>100_bases
CCCGCAGCGCAAGGAGACATCCCACGATGTACATCTACGACGCCATTGACCAGCAGCTTGTCGACGAACGCGTCGTCCAG
TTCTCGGACCAGACGCGCCG

Product: transmembrane cytochrome O ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKPSHLHCVHAGETAPHGSLRGYTVGLLLSVALTLAAFATVMTGALPARLALAGMVGLCVAQLLVQLVYFLHLGTGPGQR
GNTAIFVCTGLLIAIVVAGSLWVMHNANENMMPTDMSVERARARD

Sequences:

>Translated_125_residues
MKPSHLHCVHAGETAPHGSLRGYTVGLLLSVALTLAAFATVMTGALPARLALAGMVGLCVAQLLVQLVYFLHLGTGPGQR
GNTAIFVCTGLLIAIVVAGSLWVMHNANENMMPTDMSVERARARD
>Mature_125_residues
MKPSHLHCVHAGETAPHGSLRGYTVGLLLSVALTLAAFATVMTGALPARLALAGMVGLCVAQLLVQLVYFLHLGTGPGQR
GNTAIFVCTGLLIAIVVAGSLWVMHNANENMMPTDMSVERARARD

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=103, Percent_Identity=45.6310679611651, Blast_Score=87, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 13106; Mature: 13106

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSHLHCVHAGETAPHGSLRGYTVGLLLSVALTLAAFATVMTGALPARLALAGMVGLCV
CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AQLLVQLVYFLHLGTGPGQRGNTAIFVCTGLLIAIVVAGSLWVMHNANENMMPTDMSVER
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHH
ARARD
HHCCC
>Mature Secondary Structure
MKPSHLHCVHAGETAPHGSLRGYTVGLLLSVALTLAAFATVMTGALPARLALAGMVGLCV
CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AQLLVQLVYFLHLGTGPGQRGNTAIFVCTGLLIAIVVAGSLWVMHNANENMMPTDMSVER
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHH
ARARD
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]