Click here to switch to the map view.

The map label for this gene is yjiR [C]

Identifier: 17546576

GI number: 17546576

Start: 2040079

End: 2041470

Strand: Reverse

Name: yjiR [C]

Synonym: RSc1857

Alternate gene names: 17546576

Gene position: 2041470-2040079 (Counterclockwise)

Preceding gene: 17546584

Following gene: 17546574

Centisome position: 54.93

GC content: 69.9

Gene sequence:

>1392_bases
ATGGAGACCATACAACACCGGAATGCAGGCCCTCAGTGGGATCTGAGGATCACCCGGACAGGCGGTGCGAGGTATCTACA
GATCGTCGAGTTCATCGAGCAGGCGATCGGCGACGGACGGCTGGCCGCCGGAGACCGTGTGCCGCCGCAGCGCAGCCTGG
CCAAGGCACTCGGGGTCGATCTCACGACGGTGACGCGGGCCTATACCGAAGCCAAGCGCCGCCACCTCATCGATGCCCGG
GGGGCGCTCGGCACCTTCATCGCTGCCCCGCGCGCGGAGCTTGCCCGGGTCGTGGACATGAGCATGAACGTTCCGCCGCC
GCCCGCCGGACTGGACTTCCAGGACCTGCTGCGGCGAGGGCTGTCGCAAGTCCTGCTGCACAGCGACCCGCACCTGTTGA
TGACCTACCAGCTCGGGGGCGGCAGTCCGGCCGATCGCGCCGCCGGCGCAAACTGGTTGGCGCAGATCGTGGGGGCGGTC
GATGCATCGAGGCTGGTGGTCTGTCCCGGCGCGCAGGCGGCCCTCGCGGCCGTGATCCTGAGCCACACACGCCCCGGCGA
TGCCATCGTCACCGAGCCGCTGACCTACCCGGGGATCCGCGCCGCGGCGGTCCAACTCGGCCGGCGTGTCCTCACGGTCG
CGTGCGACGCGGATGGGATGCGCCCCGACGCGCTTGAGGCGGCCTGCGCGCAGGGGGCCAGGCTGGCTTATCTGAACCCG
ACGGCGCAGAACCCGACCACGCATACCATGCCGGCCGCGCGCAGGGCCGACATTGCGCGAACGGCCGAACGATGCGGCGT
CACGATCCTGGAAGACGATCCCTACTGGCTGCTGACACCGGACGCGCCGCCTCCGCTGGCCCATTTCGCGCCGGCGCAGA
CGTACTACGTGTCGACGCTGTCCAAAACCCTGAGTCCGGGATTACGCACCGCCTACCTTCTGCTGCCCGCGGGAACGCGC
GGCGACGACCTGCTGGCGGCCCTTCGCGCATTCGCCCTGATGGCGGCCCCCGTGACCGCGGCCCTGTCCACGCAGTGGAT
ACAGGACGGCTCGGCCCCGCAGTTGCTGGACGGCATCCGCACGGAGGCCTTCGCGCGGCGTGAACTGGCAGACCGGTGGC
TCAGCGGGATCGGGCAGGCGCCGCCGACAGGCATTCACGTGTGGCACCGTCTGCCAGACCATTGGTCCACGCACCAACTG
ACCCGCGCCGCACTGGCGGAAGACCTGCGTGTCACCCCGTCCGACGCTTTTTGCGATGGGCCGAACCCGCCCAATGCGAT
CCGCATCTCGCTGGGCGGCGTCGACGATCGGGCGCAGCTGTCGCTGGCGCTGCGGAAACTGGCCGTCTTGCTGGAGCGCA
AGCCGGCCATCGGCGGGGAACTCGTGGTCTGA

Upstream 100 bases:

>100_bases
TGGAAAAACACCCGGCTGCGCAAGAGATGTATGGATCCCGGCAATGATGTCTGGCATCCTATAGAAAGACAAAACCCATA
CAAGAAAGAAGATTCGCGCC

Downstream 100 bases:

>100_bases
ACGGGGAAGCCTCTCCGCAACGTTGACCGACATTTCCGCCGCGATCCGTTGGCCGCCGACCATCCCGGATGGTCGCCTTG
TCGCCACCGCCGTACATCGT

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
METIQHRNAGPQWDLRITRTGGARYLQIVEFIEQAIGDGRLAAGDRVPPQRSLAKALGVDLTTVTRAYTEAKRRHLIDAR
GALGTFIAAPRAELARVVDMSMNVPPPPAGLDFQDLLRRGLSQVLLHSDPHLLMTYQLGGGSPADRAAGANWLAQIVGAV
DASRLVVCPGAQAALAAVILSHTRPGDAIVTEPLTYPGIRAAAVQLGRRVLTVACDADGMRPDALEAACAQGARLAYLNP
TAQNPTTHTMPAARRADIARTAERCGVTILEDDPYWLLTPDAPPPLAHFAPAQTYYVSTLSKTLSPGLRTAYLLLPAGTR
GDDLLAALRAFALMAAPVTAALSTQWIQDGSAPQLLDGIRTEAFARRELADRWLSGIGQAPPTGIHVWHRLPDHWSTHQL
TRAALAEDLRVTPSDAFCDGPNPPNAIRISLGGVDDRAQLSLALRKLAVLLERKPAIGGELVV

Sequences:

>Translated_463_residues
METIQHRNAGPQWDLRITRTGGARYLQIVEFIEQAIGDGRLAAGDRVPPQRSLAKALGVDLTTVTRAYTEAKRRHLIDAR
GALGTFIAAPRAELARVVDMSMNVPPPPAGLDFQDLLRRGLSQVLLHSDPHLLMTYQLGGGSPADRAAGANWLAQIVGAV
DASRLVVCPGAQAALAAVILSHTRPGDAIVTEPLTYPGIRAAAVQLGRRVLTVACDADGMRPDALEAACAQGARLAYLNP
TAQNPTTHTMPAARRADIARTAERCGVTILEDDPYWLLTPDAPPPLAHFAPAQTYYVSTLSKTLSPGLRTAYLLLPAGTR
GDDLLAALRAFALMAAPVTAALSTQWIQDGSAPQLLDGIRTEAFARRELADRWLSGIGQAPPTGIHVWHRLPDHWSTHQL
TRAALAEDLRVTPSDAFCDGPNPPNAIRISLGGVDDRAQLSLALRKLAVLLERKPAIGGELVV
>Mature_463_residues
METIQHRNAGPQWDLRITRTGGARYLQIVEFIEQAIGDGRLAAGDRVPPQRSLAKALGVDLTTVTRAYTEAKRRHLIDAR
GALGTFIAAPRAELARVVDMSMNVPPPPAGLDFQDLLRRGLSQVLLHSDPHLLMTYQLGGGSPADRAAGANWLAQIVGAV
DASRLVVCPGAQAALAAVILSHTRPGDAIVTEPLTYPGIRAAAVQLGRRVLTVACDADGMRPDALEAACAQGARLAYLNP
TAQNPTTHTMPAARRADIARTAERCGVTILEDDPYWLLTPDAPPPLAHFAPAQTYYVSTLSKTLSPGLRTAYLLLPAGTR
GDDLLAALRAFALMAAPVTAALSTQWIQDGSAPQLLDGIRTEAFARRELADRWLSGIGQAPPTGIHVWHRLPDHWSTHQL
TRAALAEDLRVTPSDAFCDGPNPPNAIRISLGGVDDRAQLSLALRKLAVLLERKPAIGGELVV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=315, Percent_Identity=23.1746031746032, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI33469970, Length=315, Percent_Identity=23.1746031746032, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1790797, Length=446, Percent_Identity=23.0941704035874, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1787710, Length=462, Percent_Identity=24.4588744588745, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 49472; Mature: 49472

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METIQHRNAGPQWDLRITRTGGARYLQIVEFIEQAIGDGRLAAGDRVPPQRSLAKALGVD
CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC
LTTVTRAYTEAKRRHLIDARGALGTFIAAPRAELARVVDMSMNVPPPPAGLDFQDLLRRG
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
LSQVLLHSDPHLLMTYQLGGGSPADRAAGANWLAQIVGAVDASRLVVCPGAQAALAAVIL
HHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHH
SHTRPGDAIVTEPLTYPGIRAAAVQLGRRVLTVACDADGMRPDALEAACAQGARLAYLNP
HCCCCCCCEEECCCCCCCHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHCCCEEEEECC
TAQNPTTHTMPAARRADIARTAERCGVTILEDDPYWLLTPDAPPPLAHFAPAQTYYVSTL
CCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHH
SKTLSPGLRTAYLLLPAGTRGDDLLAALRAFALMAAPVTAALSTQWIQDGSAPQLLDGIR
HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TEAFARRELADRWLSGIGQAPPTGIHVWHRLPDHWSTHQLTRAALAEDLRVTPSDAFCDG
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
PNPPNAIRISLGGVDDRAQLSLALRKLAVLLERKPAIGGELVV
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
METIQHRNAGPQWDLRITRTGGARYLQIVEFIEQAIGDGRLAAGDRVPPQRSLAKALGVD
CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC
LTTVTRAYTEAKRRHLIDARGALGTFIAAPRAELARVVDMSMNVPPPPAGLDFQDLLRRG
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
LSQVLLHSDPHLLMTYQLGGGSPADRAAGANWLAQIVGAVDASRLVVCPGAQAALAAVIL
HHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHH
SHTRPGDAIVTEPLTYPGIRAAAVQLGRRVLTVACDADGMRPDALEAACAQGARLAYLNP
HCCCCCCCEEECCCCCCCHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHCCCEEEEECC
TAQNPTTHTMPAARRADIARTAERCGVTILEDDPYWLLTPDAPPPLAHFAPAQTYYVSTL
CCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHH
SKTLSPGLRTAYLLLPAGTRGDDLLAALRAFALMAAPVTAALSTQWIQDGSAPQLLDGIR
HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TEAFARRELADRWLSGIGQAPPTGIHVWHRLPDHWSTHQLTRAALAEDLRVTPSDAFCDG
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
PNPPNAIRISLGGVDDRAQLSLALRKLAVLLERKPAIGGELVV
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]