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The map label for this gene is traC [H]

Identifier: 17546584

GI number: 17546584

Start: 2049204

End: 2051444

Strand: Reverse

Name: traC [H]

Synonym: RSc1865

Alternate gene names: 17546584

Gene position: 2051444-2049204 (Counterclockwise)

Preceding gene: 17546585

Following gene: 17546576

Centisome position: 55.2

GC content: 66.27

Gene sequence:

>2241_bases
TTGAACGCTACCCTCTCTATCGAACAGCAATTCGCCGCTGCTATGGTCGAACATGGTTTGCAGCCCGGCGAGATCGTGGC
AGACGGCAAGCTGCACCGCTTCGATGGCCCCGACGAAAAGCGCGGCAAGCGCTCCGCCTGGTATGTGCTGCACGGCGATG
GCCTGCCGGCTGGTAGCTTCGGCGACTGGCGCACCGGCTTGTCTGAGACGTGGTGCGCCAAGTCCGATCGCACCATGACC
GCCGCCGAGCGCCTGGCGCACCGACTGCGCATCGAGCAGGCCAAGGCTGAGGCAGCCGCTGAGCGTGCCAAGGTGGCGGG
GGAGGCCGCTGCGAAGTGCGCAGAGCTGTGGAACATCGCGGCGAACGTTGACGGCGGCCACGACTACATCGAGCGCAAGG
GCATCAAGCCGGCGGGCGCGAAGCAGTTGCGTGATGCTCTGCTTATCCCGCTGCGGGATGCCGGCGGCGAGCTGCGCAGC
CTGCAATTCATCCAGCCAGACGGCGCCAAGCGGTTCAAGACGGGCGGCACGGTGGCGGGCTGCTACTGCGCTCTGGGCGG
CAAGCCCGGGCCGGATGCTCCGCTGTTGATCTGCGAGGGCTGGGCCACGGCGTGCAGCCTGCATGAGGCGACCAGCTACC
CGGTGGCCGCGGCGATGAACGCCGGCAACCTGCTTGCCGTGGCACAGGCGCTGCGGACCAAACTCCCAGACGTGCCGATG
ATTGTCTGCGCCGACGACGACATTGAGACGGCGGGCAATCCGGGGTTGACCAAGGCGCGGGAAGCAGCCCAGGCCATCGG
CGCACTGCTGGCGGTACCGGATTTCGGGCCGGAGCGCCCGGACGGCGCCACCGACTTCAATGACCTGGCCGTGGCGTGCG
GTCACGGTGCTGTCCTGGATTGCATTGAGGCCGTTCGGAGCGGAAAAGCCGCCGACGATGGGGCAGACGAAATCACGGTG
GCAGAAACCGACGAGCAGGCCGTCGAGCGTCTGGCTTCCCTGAGCCCGATGCAATACGACCGTGTGCGCAAGGCCGAGGC
CAAACGCATGGGCGTGCAGTTCGGCACGCTTGACCGGATGGTGAAGGACGCACGCGGCGAGGCAGCGAGCGAGGAGGCGG
CTCCGTTCGAGGATGTGGAGCCGTGGCCCGAGCCGGTGGACGGCGCGGAGCTGCTGAGCGAGATCGCCCGCTCTATCCGG
CGCTTCATCATCTGCGACCCGGAGACCATCGCAGCGACGGCGCTATGGTGCGTCGCATCTTGGCTGGCGGATTCCGTCAA
CGTCTGCCCGATCTTGCTCATCAACGCTCCCGAAAAGGCCTGCGGTAAGACGCAACTGCTGACGGTGACCGGAAAGCTAG
TGCCACGGCCAGCTCAGGCGGCGGGCATTTCGCCATCGGTGCTGTTCCGCATGATCGAGAAGTACAAGCCAACGCTGCTG
GTGGACGAGATTGAAACAGTGCTGACCAAGGAGGCGGAAGACCTGCGCGGGCTGATGAACGTCGGCCACACCCGCGATTC
CGCGTTCGTCTGGCGCAGTGTCGCCGTGGGTGATGACTTCGAGCCCAAGCGGTTCAGTGTGTTCGGGTTCAAGGCCGTGG
CCGGCATCAACGCCGACAAGTTGGCCGAGACGATCACCAGCCGCGCTGTGGTGGCGCAGATGCGTCGCAAGATGCCGCAC
GAGACGGCGGAGCGCCTGCGACACGCCGAGCCCGATCTGTTCGACACGCTGTGCGCGAAGCTGGCGCGCTGGGCCGACGA
CAACGGCGACGCGATCCGCGTTGCCCGTCCGAACCTGCCTGATGCGCTGGGGGATCGGGATCAGGACAACTGGGAGCCGC
TGCTCGCCGTAGCCGATCTGGCGGGCGGTACATGGCCGGACTACGCACGCGGCGCGGCGCTCAAGCTGTGCAATCGAGGC
GGCGAGGCTGCGCAGAGTACCGGGGCTGAGCTGCTGGCAGACATTCAGGCCGTGTTCGACCGAAAGGGGATGCAGCGCAT
CTCCATGGCCGATCTGCTGGCCGCGCTCTGCGAGGACGACGAAGCGCCCTGGAAGACATGGAATCGAGGCAAGGAGATGA
CGACCCGCCAGCTGGGCAAGAAGCTGGGCGAGTACGCCATCAAGAGCAAGGTCGTGCGGATTGGCTATGAGGCCCACCCC
TTTCAAGGTCTTTCCGCCCGGGCCTTTTTGAGTACGCGGGCAGTGCAGACATGGGCTCGGGCGATGCTGCCGTCCACATA
G

Upstream 100 bases:

>100_bases
ACGGGCGGGGTCGCATCACGTCTGGCCTTCGTCAGGCATTTGATGTGGGCGATCTGATAGAGGCTGATGCCAAGGCATGG
CAGCAATGGGAGGGCCAGCT

Downstream 100 bases:

>100_bases
CCCGTGGGCTTGTCGATCTTGGGGCCGCGTTTGCTCGTGGCCACTTGCGTGGGTGAGATGCGCCGCGCCAAGTGCAACAG
CCTTTGAGCCAGCGACTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 746; Mature: 746

Protein sequence:

>746_residues
MNATLSIEQQFAAAMVEHGLQPGEIVADGKLHRFDGPDEKRGKRSAWYVLHGDGLPAGSFGDWRTGLSETWCAKSDRTMT
AAERLAHRLRIEQAKAEAAAERAKVAGEAAAKCAELWNIAANVDGGHDYIERKGIKPAGAKQLRDALLIPLRDAGGELRS
LQFIQPDGAKRFKTGGTVAGCYCALGGKPGPDAPLLICEGWATACSLHEATSYPVAAAMNAGNLLAVAQALRTKLPDVPM
IVCADDDIETAGNPGLTKAREAAQAIGALLAVPDFGPERPDGATDFNDLAVACGHGAVLDCIEAVRSGKAADDGADEITV
AETDEQAVERLASLSPMQYDRVRKAEAKRMGVQFGTLDRMVKDARGEAASEEAAPFEDVEPWPEPVDGAELLSEIARSIR
RFIICDPETIAATALWCVASWLADSVNVCPILLINAPEKACGKTQLLTVTGKLVPRPAQAAGISPSVLFRMIEKYKPTLL
VDEIETVLTKEAEDLRGLMNVGHTRDSAFVWRSVAVGDDFEPKRFSVFGFKAVAGINADKLAETITSRAVVAQMRRKMPH
ETAERLRHAEPDLFDTLCAKLARWADDNGDAIRVARPNLPDALGDRDQDNWEPLLAVADLAGGTWPDYARGAALKLCNRG
GEAAQSTGAELLADIQAVFDRKGMQRISMADLLAALCEDDEAPWKTWNRGKEMTTRQLGKKLGEYAIKSKVVRIGYEAHP
FQGLSARAFLSTRAVQTWARAMLPST

Sequences:

>Translated_746_residues
MNATLSIEQQFAAAMVEHGLQPGEIVADGKLHRFDGPDEKRGKRSAWYVLHGDGLPAGSFGDWRTGLSETWCAKSDRTMT
AAERLAHRLRIEQAKAEAAAERAKVAGEAAAKCAELWNIAANVDGGHDYIERKGIKPAGAKQLRDALLIPLRDAGGELRS
LQFIQPDGAKRFKTGGTVAGCYCALGGKPGPDAPLLICEGWATACSLHEATSYPVAAAMNAGNLLAVAQALRTKLPDVPM
IVCADDDIETAGNPGLTKAREAAQAIGALLAVPDFGPERPDGATDFNDLAVACGHGAVLDCIEAVRSGKAADDGADEITV
AETDEQAVERLASLSPMQYDRVRKAEAKRMGVQFGTLDRMVKDARGEAASEEAAPFEDVEPWPEPVDGAELLSEIARSIR
RFIICDPETIAATALWCVASWLADSVNVCPILLINAPEKACGKTQLLTVTGKLVPRPAQAAGISPSVLFRMIEKYKPTLL
VDEIETVLTKEAEDLRGLMNVGHTRDSAFVWRSVAVGDDFEPKRFSVFGFKAVAGINADKLAETITSRAVVAQMRRKMPH
ETAERLRHAEPDLFDTLCAKLARWADDNGDAIRVARPNLPDALGDRDQDNWEPLLAVADLAGGTWPDYARGAALKLCNRG
GEAAQSTGAELLADIQAVFDRKGMQRISMADLLAALCEDDEAPWKTWNRGKEMTTRQLGKKLGEYAIKSKVVRIGYEAHP
FQGLSARAFLSTRAVQTWARAMLPST
>Mature_746_residues
MNATLSIEQQFAAAMVEHGLQPGEIVADGKLHRFDGPDEKRGKRSAWYVLHGDGLPAGSFGDWRTGLSETWCAKSDRTMT
AAERLAHRLRIEQAKAEAAAERAKVAGEAAAKCAELWNIAANVDGGHDYIERKGIKPAGAKQLRDALLIPLRDAGGELRS
LQFIQPDGAKRFKTGGTVAGCYCALGGKPGPDAPLLICEGWATACSLHEATSYPVAAAMNAGNLLAVAQALRTKLPDVPM
IVCADDDIETAGNPGLTKAREAAQAIGALLAVPDFGPERPDGATDFNDLAVACGHGAVLDCIEAVRSGKAADDGADEITV
AETDEQAVERLASLSPMQYDRVRKAEAKRMGVQFGTLDRMVKDARGEAASEEAAPFEDVEPWPEPVDGAELLSEIARSIR
RFIICDPETIAATALWCVASWLADSVNVCPILLINAPEKACGKTQLLTVTGKLVPRPAQAAGISPSVLFRMIEKYKPTLL
VDEIETVLTKEAEDLRGLMNVGHTRDSAFVWRSVAVGDDFEPKRFSVFGFKAVAGINADKLAETITSRAVVAQMRRKMPH
ETAERLRHAEPDLFDTLCAKLARWADDNGDAIRVARPNLPDALGDRDQDNWEPLLAVADLAGGTWPDYARGAALKLCNRG
GEAAQSTGAELLADIQAVFDRKGMQRISMADLLAALCEDDEAPWKTWNRGKEMTTRQLGKKLGEYAIKSKVVRIGYEAHP
FQGLSARAFLSTRAVQTWARAMLPST

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 80321; Mature: 80321

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATLSIEQQFAAAMVEHGLQPGEIVADGKLHRFDGPDEKRGKRSAWYVLHGDGLPAGSF
CCCCCCHHHHHHHHHHHCCCCCCCEEECCEEECCCCCCHHCCCCCEEEEEECCCCCCCCC
GDWRTGLSETWCAKSDRTMTAAERLAHRLRIEQAKAEAAAERAKVAGEAAAKCAELWNIA
CCHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANVDGGHDYIERKGIKPAGAKQLRDALLIPLRDAGGELRSLQFIQPDGAKRFKTGGTVAG
CCCCCCHHHHHHCCCCCCCHHHHHHHHEEEECCCCCCCCEEEEECCCCCCHHCCCCCEEE
CYCALGGKPGPDAPLLICEGWATACSLHEATSYPVAAAMNAGNLLAVAQALRTKLPDVPM
EEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHCCCCCE
IVCADDDIETAGNPGLTKAREAAQAIGALLAVPDFGPERPDGATDFNDLAVACGHGAVLD
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHEECCCCHHHH
CIEAVRSGKAADDGADEITVAETDEQAVERLASLSPMQYDRVRKAEAKRMGVQFGTLDRM
HHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
VKDARGEAASEEAAPFEDVEPWPEPVDGAELLSEIARSIRRFIICDPETIAATALWCVAS
HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHH
WLADSVNVCPILLINAPEKACGKTQLLTVTGKLVPRPAQAAGISPSVLFRMIEKYKPTLL
HHHCCCCCCEEEEEECCHHHCCCEEEEEEECCCCCCCHHHCCCCHHHHHHHHHHCCCCEE
VDEIETVLTKEAEDLRGLMNVGHTRDSAFVWRSVAVGDDFEPKRFSVFGFKAVAGINADK
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCCCCEEEEEEHHHHHCCCHHH
LAETITSRAVVAQMRRKMPHETAERLRHAEPDLFDTLCAKLARWADDNGDAIRVARPNLP
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC
DALGDRDQDNWEPLLAVADLAGGTWPDYARGAALKLCNRGGEAAQSTGAELLADIQAVFD
HHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RKGMQRISMADLLAALCEDDEAPWKTWNRGKEMTTRQLGKKLGEYAIKSKVVRIGYEAHP
HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FQGLSARAFLSTRAVQTWARAMLPST
CCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNATLSIEQQFAAAMVEHGLQPGEIVADGKLHRFDGPDEKRGKRSAWYVLHGDGLPAGSF
CCCCCCHHHHHHHHHHHCCCCCCCEEECCEEECCCCCCHHCCCCCEEEEEECCCCCCCCC
GDWRTGLSETWCAKSDRTMTAAERLAHRLRIEQAKAEAAAERAKVAGEAAAKCAELWNIA
CCHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANVDGGHDYIERKGIKPAGAKQLRDALLIPLRDAGGELRSLQFIQPDGAKRFKTGGTVAG
CCCCCCHHHHHHCCCCCCCHHHHHHHHEEEECCCCCCCCEEEEECCCCCCHHCCCCCEEE
CYCALGGKPGPDAPLLICEGWATACSLHEATSYPVAAAMNAGNLLAVAQALRTKLPDVPM
EEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHCCCCCE
IVCADDDIETAGNPGLTKAREAAQAIGALLAVPDFGPERPDGATDFNDLAVACGHGAVLD
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHEECCCCHHHH
CIEAVRSGKAADDGADEITVAETDEQAVERLASLSPMQYDRVRKAEAKRMGVQFGTLDRM
HHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
VKDARGEAASEEAAPFEDVEPWPEPVDGAELLSEIARSIRRFIICDPETIAATALWCVAS
HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHH
WLADSVNVCPILLINAPEKACGKTQLLTVTGKLVPRPAQAAGISPSVLFRMIEKYKPTLL
HHHCCCCCCEEEEEECCHHHCCCEEEEEEECCCCCCCHHHCCCCHHHHHHHHHHCCCCEE
VDEIETVLTKEAEDLRGLMNVGHTRDSAFVWRSVAVGDDFEPKRFSVFGFKAVAGINADK
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCCCCEEEEEEHHHHHCCCHHH
LAETITSRAVVAQMRRKMPHETAERLRHAEPDLFDTLCAKLARWADDNGDAIRVARPNLP
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC
DALGDRDQDNWEPLLAVADLAGGTWPDYARGAALKLCNRGGEAAQSTGAELLADIQAVFD
HHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RKGMQRISMADLLAALCEDDEAPWKTWNRGKEMTTRQLGKKLGEYAIKSKVVRIGYEAHP
HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FQGLSARAFLSTRAVQTWARAMLPST
CCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]