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The map label for this gene is 17546562

Identifier: 17546562

GI number: 17546562

Start: 2023801

End: 2025276

Strand: Reverse

Name: 17546562

Synonym: RSc1843

Alternate gene names: NA

Gene position: 2025276-2023801 (Counterclockwise)

Preceding gene: 17546563

Following gene: 17546561

Centisome position: 54.5

GC content: 65.92

Gene sequence:

>1476_bases
ATGGGCCGACCCGATACGATCACCATGAGCATGCGGGAACTGGATCGCTGCAAGGTTATTCAAGCCGTGGCCGATGACGG
CCTGATGGTCTGGCGCGCCGCGGAGAAGCTCGGGATCTCCAAGCGTCAAGTCGAACGGCTGGTGCTACGTTATCGCGAGG
ATGGGCCACAGGGATTGTGCTCGCGTAAATGGGGCCAACCAGGTCACCACCAACTGCCGCCCGGCCTCGAATCCCGCGTG
TGTGGCCTGATCCGCGACAGCTATGCGGACTTCGGCCCGACCCTGGCGGCCGAGAAGCTGCGTGAGCGCCACGGCATCGA
GATTTCCAAGGCCTGTGTGCGCCGGATCATGATCGACGCCGGTTTCTGGGTGCCCAGGAGGCAGAGACCACCCAAGGTGC
ACCAGCCGAGGAACCGGCGCGCATGCCTGGGCGAACTGGTGCAGATCGACGGCAGCGACCACGCCTGGTTCGAGGATCGG
GCGACAGCCTGCACGCTGCTGGTGTACGTCGACGACGCCACCGGCCGGTTGATGCAGCTGTTGTTCGTGCCGACCGAGTC
GACGCAGGCGTATTTCAAGGCCACGCGGGCCTACGTGGAGCGGCATGGCAAGCCGCAGGCGTTCTATTCGGATAAGGCTG
GCGTGTTCCGGGTCAACGCCCGCGACAACGCCGAGGGGCGTGGCTACACGCAGTTCGGGCGCGCGCTGTTCGAACTGAAC
ATCGACATCCTGTGTGCCAACACCAGCCAGGCCAAAGGTCGCGTGGAGCGCATGAACGGGGTGCTGCAGGACCGCCTGGT
GAAGGAGCTGCGGCTGCGCAGGGTCAGTTCGATGGAAGCGGCCAACGCCTACGCGACGACGTTTATCGCGGACTTCAATG
CGCGCTTTGCCAAGGTGCCGCGCAGCGACTTCGATGCGCACCGGCCGTTGCGTGGCGATGAGGACCTGGCGCGTATCTTC
TGCTGGCGCGAATGGCGCAAGGTGTCGCAGAACCTGACCTTGCAGTACGCCAAGGTGATGTACCTGCTGGAGGACAGGCC
CGAGCACCGGCGGCTGATCCACCGCTACCTCGAGGTGGCGGAGTATCCCGATGGTCGTGTCGAGCTGTGGGCCGATGGCA
CTGCCCTGCCCTACACCACCTATGACCGCCTCTCGGCAATCGACCAGGGCGCGATCGTCGACAACAAGCGCTTGGGGCAC
GTGTTGGCGATTGCGGCACAGGTGCAGGCACAGCGGGATGATCGACGGCAGGCCGGGCCGTCGCGCACGCTGGTGGGTGA
GCCGCCGCGCCCCAAGCGCCCGGCCCCGCAGACCAAGCGCCAGCGGCAGATCAACCGGCTGGACCTGGAGCGGGCCATCC
AGCAAGTCGGCCCCCTGTCGCCGCCGCGCCGGCCAGCCACCCGCACCACCGCCCTACGGGCAGCTCCCAAGAAGAATCGA
ACTGAGCACAAAGTGCACGCCCGTGCCGACATTTGA

Upstream 100 bases:

>100_bases
GGATTTTTTCTAATGTCGTACTTGGGATGAATTCAGATGTCGTACCCCGTCCTTGATCGTGCCAAGCTGGCGGCCTTGCC
GCCGAGCCAGGAGCGCGATC

Downstream 100 bases:

>100_bases
ATTTGGCTGGTAGGGTGACATTTCAGAACGCCCTGGACATGAGCTGTCAGGGCTAAATAGTAATGTCGCATCTGAGCCAA
ATAGAAATGTCGTACCCCTA

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 490

Protein sequence:

>491_residues
MGRPDTITMSMRELDRCKVIQAVADDGLMVWRAAEKLGISKRQVERLVLRYREDGPQGLCSRKWGQPGHHQLPPGLESRV
CGLIRDSYADFGPTLAAEKLRERHGIEISKACVRRIMIDAGFWVPRRQRPPKVHQPRNRRACLGELVQIDGSDHAWFEDR
ATACTLLVYVDDATGRLMQLLFVPTESTQAYFKATRAYVERHGKPQAFYSDKAGVFRVNARDNAEGRGYTQFGRALFELN
IDILCANTSQAKGRVERMNGVLQDRLVKELRLRRVSSMEAANAYATTFIADFNARFAKVPRSDFDAHRPLRGDEDLARIF
CWREWRKVSQNLTLQYAKVMYLLEDRPEHRRLIHRYLEVAEYPDGRVELWADGTALPYTTYDRLSAIDQGAIVDNKRLGH
VLAIAAQVQAQRDDRRQAGPSRTLVGEPPRPKRPAPQTKRQRQINRLDLERAIQQVGPLSPPRRPATRTTALRAAPKKNR
TEHKVHARADI

Sequences:

>Translated_491_residues
MGRPDTITMSMRELDRCKVIQAVADDGLMVWRAAEKLGISKRQVERLVLRYREDGPQGLCSRKWGQPGHHQLPPGLESRV
CGLIRDSYADFGPTLAAEKLRERHGIEISKACVRRIMIDAGFWVPRRQRPPKVHQPRNRRACLGELVQIDGSDHAWFEDR
ATACTLLVYVDDATGRLMQLLFVPTESTQAYFKATRAYVERHGKPQAFYSDKAGVFRVNARDNAEGRGYTQFGRALFELN
IDILCANTSQAKGRVERMNGVLQDRLVKELRLRRVSSMEAANAYATTFIADFNARFAKVPRSDFDAHRPLRGDEDLARIF
CWREWRKVSQNLTLQYAKVMYLLEDRPEHRRLIHRYLEVAEYPDGRVELWADGTALPYTTYDRLSAIDQGAIVDNKRLGH
VLAIAAQVQAQRDDRRQAGPSRTLVGEPPRPKRPAPQTKRQRQINRLDLERAIQQVGPLSPPRRPATRTTALRAAPKKNR
TEHKVHARADI
>Mature_490_residues
GRPDTITMSMRELDRCKVIQAVADDGLMVWRAAEKLGISKRQVERLVLRYREDGPQGLCSRKWGQPGHHQLPPGLESRVC
GLIRDSYADFGPTLAAEKLRERHGIEISKACVRRIMIDAGFWVPRRQRPPKVHQPRNRRACLGELVQIDGSDHAWFEDRA
TACTLLVYVDDATGRLMQLLFVPTESTQAYFKATRAYVERHGKPQAFYSDKAGVFRVNARDNAEGRGYTQFGRALFELNI
DILCANTSQAKGRVERMNGVLQDRLVKELRLRRVSSMEAANAYATTFIADFNARFAKVPRSDFDAHRPLRGDEDLARIFC
WREWRKVSQNLTLQYAKVMYLLEDRPEHRRLIHRYLEVAEYPDGRVELWADGTALPYTTYDRLSAIDQGAIVDNKRLGHV
LAIAAQVQAQRDDRRQAGPSRTLVGEPPRPKRPAPQTKRQRQINRLDLERAIQQVGPLSPPRRPATRTTALRAAPKKNRT
EHKVHARADI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 56167; Mature: 56036

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRPDTITMSMRELDRCKVIQAVADDGLMVWRAAEKLGISKRQVERLVLRYREDGPQGLC
CCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHCCCCCCHH
SRKWGQPGHHQLPPGLESRVCGLIRDSYADFGPTLAAEKLRERHGIEISKACVRRIMIDA
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHC
GFWVPRRQRPPKVHQPRNRRACLGELVQIDGSDHAWFEDRATACTLLVYVDDATGRLMQL
CCCCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEEECCHHHEEEH
LFVPTESTQAYFKATRAYVERHGKPQAFYSDKAGVFRVNARDNAEGRGYTQFGRALFELN
EEECCCCHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCC
IDILCANTSQAKGRVERMNGVLQDRLVKELRLRRVSSMEAANAYATTFIADFNARFAKVP
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
RSDFDAHRPLRGDEDLARIFCWREWRKVSQNLTLQYAKVMYLLEDRPEHRRLIHRYLEVA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
EYPDGRVELWADGTALPYTTYDRLSAIDQGAIVDNKRLGHVLAIAAQVQAQRDDRRQAGP
HCCCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCC
SRTLVGEPPRPKRPAPQTKRQRQINRLDLERAIQQVGPLSPPRRPATRTTALRAAPKKNR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCC
TEHKVHARADI
CHHHCEECCCC
>Mature Secondary Structure 
GRPDTITMSMRELDRCKVIQAVADDGLMVWRAAEKLGISKRQVERLVLRYREDGPQGLC
CCCCEEEHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHCCCCCCHH
SRKWGQPGHHQLPPGLESRVCGLIRDSYADFGPTLAAEKLRERHGIEISKACVRRIMIDA
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHC
GFWVPRRQRPPKVHQPRNRRACLGELVQIDGSDHAWFEDRATACTLLVYVDDATGRLMQL
CCCCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEEECCHHHEEEH
LFVPTESTQAYFKATRAYVERHGKPQAFYSDKAGVFRVNARDNAEGRGYTQFGRALFELN
EEECCCCHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCC
IDILCANTSQAKGRVERMNGVLQDRLVKELRLRRVSSMEAANAYATTFIADFNARFAKVP
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
RSDFDAHRPLRGDEDLARIFCWREWRKVSQNLTLQYAKVMYLLEDRPEHRRLIHRYLEVA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
EYPDGRVELWADGTALPYTTYDRLSAIDQGAIVDNKRLGHVLAIAAQVQAQRDDRRQAGP
HCCCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCC
SRTLVGEPPRPKRPAPQTKRQRQINRLDLERAIQQVGPLSPPRRPATRTTALRAAPKKNR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCC
TEHKVHARADI
CHHHCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]