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The map label for this gene is 17546561

Identifier: 17546561

GI number: 17546561

Start: 2023255

End: 2023647

Strand: Reverse

Name: 17546561

Synonym: RSc1842

Alternate gene names: NA

Gene position: 2023647-2023255 (Counterclockwise)

Preceding gene: 17546562

Following gene: 17546558

Centisome position: 54.45

GC content: 65.14

Gene sequence:

>393_bases
ATGCCGAAGCCCGAGGCCATCACCATGACGATGCGCGAACTGGACCGACTCAAGGTGATTCAAGCAGTGGTTGACCATGG
CTTGGCGGTTTGGCGCGCCGCTGAGCGGCTCGGCTTGTCCAGGCGGCACGTCGAACGGCTGGTGCTGCGCTATCGTGAGG
ATGGGCCACAGGGATTGTGCTCGCGTAAATGGGGCCAACCAGGTCACCACCAACTGCCGCCCGGCCTCGAATCCCGCGTG
TGTGGCCTGATCCGCGACAGCTATGCGGACTTCGGCCCGACCCTGGCGGCCGAGAGGCTGCGTGAGCGCCACGGCATCGA
GATTTCCAAGGCCTGTGTGCGCCGGATCTGGTCAAACGCCAGGCGCTACAGCAGGCCAATGCCCGGCTGCTGA

Upstream 100 bases:

>100_bases
TAAATAGTAATGTCGCATCTGAGCCAAATAGAAATGTCGTACCCCTAGGCTAACCCAGGCATGCTGGCGGTTTCCCGTCT
GTTCGAGACTGGAGGCTGCG

Downstream 100 bases:

>100_bases
GCGAGCGGAAGGCGCAAGCCGCCGCGGTCGCGCTGCCCGAGGGCATCCAGGGCATCCCCTCCATCCGCTACGATTCGAGC
GCGGATGCCCCCCTCACGGC

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MPKPEAITMTMRELDRLKVIQAVVDHGLAVWRAAERLGLSRRHVERLVLRYREDGPQGLCSRKWGQPGHHQLPPGLESRV
CGLIRDSYADFGPTLAAERLRERHGIEISKACVRRIWSNARRYSRPMPGC

Sequences:

>Translated_130_residues
MPKPEAITMTMRELDRLKVIQAVVDHGLAVWRAAERLGLSRRHVERLVLRYREDGPQGLCSRKWGQPGHHQLPPGLESRV
CGLIRDSYADFGPTLAAERLRERHGIEISKACVRRIWSNARRYSRPMPGC
>Mature_129_residues
PKPEAITMTMRELDRLKVIQAVVDHGLAVWRAAERLGLSRRHVERLVLRYREDGPQGLCSRKWGQPGHHQLPPGLESRVC
GLIRDSYADFGPTLAAERLRERHGIEISKACVRRIWSNARRYSRPMPGC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 14906; Mature: 14774

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKPEAITMTMRELDRLKVIQAVVDHGLAVWRAAERLGLSRRHVERLVLRYREDGPQGLC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHH
SRKWGQPGHHQLPPGLESRVCGLIRDSYADFGPTLAAERLRERHGIEISKACVRRIWSNA
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RRYSRPMPGC
HHHCCCCCCC
>Mature Secondary Structure 
PKPEAITMTMRELDRLKVIQAVVDHGLAVWRAAERLGLSRRHVERLVLRYREDGPQGLC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHH
SRKWGQPGHHQLPPGLESRVCGLIRDSYADFGPTLAAERLRERHGIEISKACVRRIWSNA
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RRYSRPMPGC
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]