| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is iorA [H]
Identifier: 17546548
GI number: 17546548
Start: 1999259
End: 2001475
Strand: Reverse
Name: iorA [H]
Synonym: RSc1829
Alternate gene names: 17546548
Gene position: 2001475-1999259 (Counterclockwise)
Preceding gene: 17546549
Following gene: 17546547
Centisome position: 53.86
GC content: 70.05
Gene sequence:
>2217_bases GTGACCAAGGCGCTGCTGGAATCGGGCGTCGCCTACGTGGCCGGCTACCAGGGCGCGCCGATCTCGCACCTGATGGACGT GCTGGCCGACGCGCAGGACATCCTGGGCGAGCACGGCATCCGCTTCGAGAACAGCGCCAGCGAAGCGACCGCGGCGGCCA CGCTGGCGGCGTCGGTCAACTATCCGCTGCGCGGCGCGGTCACCTTCAAGGCCACGGTCGGCACCAACGTCGCGTCGGAC GCGCTGGCCAACCTGGCCTCGGGCGGCGTGCTGGGCGGCGCGCTCATCATCGTGGGCGAAGACTACGGCGAGGGCTCGTC GATCATGCAGGAGCGCAGCCACGCCTTCGCGATGAAGTCGCAGATGTGGCTGCTCGATCCCCGCCCCAACCTGCCCTGCA TCGTGCAGGCGGTCAAGGACGGCTTCGATCTGTCGGAGGCCAGCAGCACGCCGGTGATGCTGCAGATGCGCATCCGGTCG TGTCACGTGCACGGCCAGTTCGTCACGTCGGCGAACCGGCGGCCGGCCTTCACCGTCAAGGACGCGCTCGAGAACCCCAC GCGGGACCTCAGCCGCATCGTCCTGCCGCCCGCGAGCTTCCAGCACGAGAAGGAGAAGGTGCATGACCGCTGGCCGGCCG CCATCCGCTTCATCCAGGCGCGCAAGCTCAACGAGTTCTTCTCGGAAGACGCGGCCGACGTCGGCATCGCGCTGCAGGGC GGCAACTACAACACCCTGATCCGGGCGCTGCAGAAGCTCGGCCTGGCCGACGTGTACGGCGAGTCGAAGATTCCGCTGTA CGTCATGAACGTGGCCTACCCGCTGGTGGACGCCGAGTTCGAGCGCTTCTGCCAGGGCAAGCGCGCCATCCTGGTCCTGG AAGAAGGGCAGCCGAATTTCGTCGAGCAGAACGTCGCCAATATCCTGCGCCAGCTGGGCGTGCCGACCGCGCTGCACGGC AAGGATCTGCTGCCCATGGCGGGCGAGTACAACACCGCCACCGTGCTCACCGGCGTGCGCGCCTTCCTGGAGCGCTACGG CCACCTCGAGCCGCAGCCCAAGCCGGCGCGCAAGCAGCGCGTCATTCCGCTGACGGTGGTTGCGGCCAGCGCGGCGGACA CGCCCCGCCAGCCGGCCCTGGCCGTCGGCACTGGGGACGATGACAACGGAGAAGGCAACGCCATTCCCGCCGCCAGCATC GCCGCCGAGCAGGCTGCGGGGGAAGCCAGCGCCGGCGAAGACGTGGCGGTGCTCCCGCCGCTGGAGCCGGTGGTGCATGC CCGGCCGCCCGGCTTCTGCACGGGCTGTCCGGAGCGGCCGATCTTCACCGCCATGAAGCTGGTCGAGCGCGAGCTGGGGC CCCATCACGTCAGCGCGGACATCGGCTGCCACCTGTTCTCCATCCTGCCGCCCTTCAACCTCGGCAACACCACGATGGGA TACGGCTTGGGCGCCGCCGGCGCGGCCGCGCTGAACGCACCGGCCGGCAAGCGCGCCATCGCAGTGATGGGCGACGGCGG CTTCTGGCACAACGGCCTGACCAGCGGCGTCGCCAACGCGGTGTTCAACCGCAGCGACAACCTGACGATCATCGTCGACA ACAGCTACACCTCGGCCACCGGCGGCCAGGACATCCTCTCGTCCACCGCGCTCAACCCGACGCGCAGCACGGGCCACGCG ATTGAGCAGGCCGTCAAGGGCGTCGGCGTCGAGTGGGTCCGCACGATCAAGCGGACCTATGACCTGAAGACCATGACGGC GACGCTGCGCGAAGCGCTGACCACTCCGGTGAAAGGGCCGAAGGTGCTCATCGCCCAGAGTGAATGCATGCTCAACAAGC AGCGGCGCGAGAAGCCCCGGGCGCGCAAGGCCGCCGCCGCCGGCGAGCGCGTGGTGCGCGAGCGCTTCGGCGTGGACCCG GACACCTGCACCGGCGACCACTCCTGCATCCGGCTCTCGGGCTGCCCGTCGCTGTCGATCCGCCCCAACCCCGACCCGCT GCGCCGTGACCCCGTCGCCACCGTGATCGACAGCTGCGTGGGCTGCGGCCTGTGCGGTGAGGTCTCGCATGCCGCCGTGC TCTGCCCGTCGTTCTTCCGCGCCGAGATCGTCAGCAACCCGACGCGCCTGGACCGGCTGCGCCAGCGCGTGCGCGAGGGC GTGATCGGCTGGCTGCAGCGCCGCGACGCGAGGCGCCGGGTCCGGTACGCGTTCTGA
Upstream 100 bases:
>100_bases GCGCAGGACGGAATCATCAACTCAAGTGTGAGGCGGTGTCCGGAGATGCGGGGGCAAATCCAGCGCGGGCGAGGTTTTCA GCGGCGAGGGCATCCTGGCC
Downstream 100 bases:
>100_bases CGCCGCGCGGCCGGCGCGCATCCGGCCACCGCCCTGCTTTTCCTTTCGCACCGACGCGCCACGACTTCCCGTGCGCGCTC GGCGCCCCGCATCACCGCAC
Product: indolepyruvate ferredoxin alpha subunit oxidoreductase
Products: NA
Alternate protein names: IOR; Indolepyruvate ferredoxin oxidoreductase subunit alpha [H]
Number of amino acids: Translated: 738; Mature: 737
Protein sequence:
>738_residues MTKALLESGVAYVAGYQGAPISHLMDVLADAQDILGEHGIRFENSASEATAAATLAASVNYPLRGAVTFKATVGTNVASD ALANLASGGVLGGALIIVGEDYGEGSSIMQERSHAFAMKSQMWLLDPRPNLPCIVQAVKDGFDLSEASSTPVMLQMRIRS CHVHGQFVTSANRRPAFTVKDALENPTRDLSRIVLPPASFQHEKEKVHDRWPAAIRFIQARKLNEFFSEDAADVGIALQG GNYNTLIRALQKLGLADVYGESKIPLYVMNVAYPLVDAEFERFCQGKRAILVLEEGQPNFVEQNVANILRQLGVPTALHG KDLLPMAGEYNTATVLTGVRAFLERYGHLEPQPKPARKQRVIPLTVVAASAADTPRQPALAVGTGDDDNGEGNAIPAASI AAEQAAGEASAGEDVAVLPPLEPVVHARPPGFCTGCPERPIFTAMKLVERELGPHHVSADIGCHLFSILPPFNLGNTTMG YGLGAAGAAALNAPAGKRAIAVMGDGGFWHNGLTSGVANAVFNRSDNLTIIVDNSYTSATGGQDILSSTALNPTRSTGHA IEQAVKGVGVEWVRTIKRTYDLKTMTATLREALTTPVKGPKVLIAQSECMLNKQRREKPRARKAAAAGERVVRERFGVDP DTCTGDHSCIRLSGCPSLSIRPNPDPLRRDPVATVIDSCVGCGLCGEVSHAAVLCPSFFRAEIVSNPTRLDRLRQRVREG VIGWLQRRDARRRVRYAF
Sequences:
>Translated_738_residues MTKALLESGVAYVAGYQGAPISHLMDVLADAQDILGEHGIRFENSASEATAAATLAASVNYPLRGAVTFKATVGTNVASD ALANLASGGVLGGALIIVGEDYGEGSSIMQERSHAFAMKSQMWLLDPRPNLPCIVQAVKDGFDLSEASSTPVMLQMRIRS CHVHGQFVTSANRRPAFTVKDALENPTRDLSRIVLPPASFQHEKEKVHDRWPAAIRFIQARKLNEFFSEDAADVGIALQG GNYNTLIRALQKLGLADVYGESKIPLYVMNVAYPLVDAEFERFCQGKRAILVLEEGQPNFVEQNVANILRQLGVPTALHG KDLLPMAGEYNTATVLTGVRAFLERYGHLEPQPKPARKQRVIPLTVVAASAADTPRQPALAVGTGDDDNGEGNAIPAASI AAEQAAGEASAGEDVAVLPPLEPVVHARPPGFCTGCPERPIFTAMKLVERELGPHHVSADIGCHLFSILPPFNLGNTTMG YGLGAAGAAALNAPAGKRAIAVMGDGGFWHNGLTSGVANAVFNRSDNLTIIVDNSYTSATGGQDILSSTALNPTRSTGHA IEQAVKGVGVEWVRTIKRTYDLKTMTATLREALTTPVKGPKVLIAQSECMLNKQRREKPRARKAAAAGERVVRERFGVDP DTCTGDHSCIRLSGCPSLSIRPNPDPLRRDPVATVIDSCVGCGLCGEVSHAAVLCPSFFRAEIVSNPTRLDRLRQRVREG VIGWLQRRDARRRVRYAF >Mature_737_residues TKALLESGVAYVAGYQGAPISHLMDVLADAQDILGEHGIRFENSASEATAAATLAASVNYPLRGAVTFKATVGTNVASDA LANLASGGVLGGALIIVGEDYGEGSSIMQERSHAFAMKSQMWLLDPRPNLPCIVQAVKDGFDLSEASSTPVMLQMRIRSC HVHGQFVTSANRRPAFTVKDALENPTRDLSRIVLPPASFQHEKEKVHDRWPAAIRFIQARKLNEFFSEDAADVGIALQGG NYNTLIRALQKLGLADVYGESKIPLYVMNVAYPLVDAEFERFCQGKRAILVLEEGQPNFVEQNVANILRQLGVPTALHGK DLLPMAGEYNTATVLTGVRAFLERYGHLEPQPKPARKQRVIPLTVVAASAADTPRQPALAVGTGDDDNGEGNAIPAASIA AEQAAGEASAGEDVAVLPPLEPVVHARPPGFCTGCPERPIFTAMKLVERELGPHHVSADIGCHLFSILPPFNLGNTTMGY GLGAAGAAALNAPAGKRAIAVMGDGGFWHNGLTSGVANAVFNRSDNLTIIVDNSYTSATGGQDILSSTALNPTRSTGHAI EQAVKGVGVEWVRTIKRTYDLKTMTATLREALTTPVKGPKVLIAQSECMLNKQRREKPRARKAAAAGERVVRERFGVDPD TCTGDHSCIRLSGCPSLSIRPNPDPLRRDPVATVIDSCVGCGLCGEVSHAAVLCPSFFRAEIVSNPTRLDRLRQRVREGV IGWLQRRDARRRVRYAF
Specific function: Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates [H]
COG id: COG4231
COG function: function code C; Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR017721 - InterPro: IPR002880 - InterPro: IPR011766 - InterPro: IPR009014 - InterPro: IPR015941 [H]
Pfam domain/function: PF01855 POR_N; PF02775 TPP_enzyme_C [H]
EC number: =1.2.7.8 [H]
Molecular weight: Translated: 79088; Mature: 78957
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKALLESGVAYVAGYQGAPISHLMDVLADAQDILGEHGIRFENSASEATAAATLAASVN CCHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC YPLRGAVTFKATVGTNVASDALANLASGGVLGGALIIVGEDYGEGSSIMQERSHAFAMKS CCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC QMWLLDPRPNLPCIVQAVKDGFDLSEASSTPVMLQMRIRSCHVHGQFVTSANRRPAFTVK CEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHEECCEEEECCCCCCCEEHH DALENPTRDLSRIVLPPASFQHEKEKVHDRWPAAIRFIQARKLNEFFSEDAADVGIALQG HHHCCHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC GNYNTLIRALQKLGLADVYGESKIPLYVMNVAYPLVDAEFERFCQGKRAILVLEEGQPNF CCHHHHHHHHHHCCCHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEEECCCCCH VEQNVANILRQLGVPTALHGKDLLPMAGEYNTATVLTGVRAFLERYGHLEPQPKPARKQR HHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCC VIPLTVVAASAADTPRQPALAVGTGDDDNGEGNAIPAASIAAEQAAGEASAGEDVAVLPP CEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCC LEPVVHARPPGFCTGCPERPIFTAMKLVERELGPHHVSADIGCHLFSILPPFNLGNTTMG CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCCCCCC YGLGAAGAAALNAPAGKRAIAVMGDGGFWHNGLTSGVANAVFNRSDNLTIIVDNSYTSAT CCCCCCCHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC GGQDILSSTALNPTRSTGHAIEQAVKGVGVEWVRTIKRTYDLKTMTATLREALTTPVKGP CCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC KVLIAQSECMLNKQRREKPRARKAAAAGERVVRERFGVDPDTCTGDHSCIRLSGCPSLSI EEEEECHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC RPNPDPLRRDPVATVIDSCVGCGLCGEVSHAAVLCPSFFRAEIVSNPTRLDRLRQRVREG CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHH VIGWLQRRDARRRVRYAF HHHHHHHHHHHHHHCCCC >Mature Secondary Structure TKALLESGVAYVAGYQGAPISHLMDVLADAQDILGEHGIRFENSASEATAAATLAASVN CHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC YPLRGAVTFKATVGTNVASDALANLASGGVLGGALIIVGEDYGEGSSIMQERSHAFAMKS CCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC QMWLLDPRPNLPCIVQAVKDGFDLSEASSTPVMLQMRIRSCHVHGQFVTSANRRPAFTVK CEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHEECCEEEECCCCCCCEEHH DALENPTRDLSRIVLPPASFQHEKEKVHDRWPAAIRFIQARKLNEFFSEDAADVGIALQG HHHCCHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC GNYNTLIRALQKLGLADVYGESKIPLYVMNVAYPLVDAEFERFCQGKRAILVLEEGQPNF CCHHHHHHHHHHCCCHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEEECCCCCH VEQNVANILRQLGVPTALHGKDLLPMAGEYNTATVLTGVRAFLERYGHLEPQPKPARKQR HHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCC VIPLTVVAASAADTPRQPALAVGTGDDDNGEGNAIPAASIAAEQAAGEASAGEDVAVLPP CEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCC LEPVVHARPPGFCTGCPERPIFTAMKLVERELGPHHVSADIGCHLFSILPPFNLGNTTMG CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCCCCCC YGLGAAGAAALNAPAGKRAIAVMGDGGFWHNGLTSGVANAVFNRSDNLTIIVDNSYTSAT CCCCCCCHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC GGQDILSSTALNPTRSTGHAIEQAVKGVGVEWVRTIKRTYDLKTMTATLREALTTPVKGP CCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC KVLIAQSECMLNKQRREKPRARKAAAAGERVVRERFGVDPDTCTGDHSCIRLSGCPSLSI EEEEECHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC RPNPDPLRRDPVATVIDSCVGCGLCGEVSHAAVLCPSFFRAEIVSNPTRLDRLRQRVREG CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHH VIGWLQRRDARRRVRYAF HHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]