| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is rhbE [H]
Identifier: 17546536
GI number: 17546536
Start: 1985883
End: 1987271
Strand: Direct
Name: rhbE [H]
Synonym: RSc1817
Alternate gene names: 17546536
Gene position: 1985883-1987271 (Clockwise)
Preceding gene: 17546535
Following gene: 17546537
Centisome position: 53.44
GC content: 62.2
Gene sequence:
>1389_bases ATGAAGCCGACTGCTTGCACAACCCCAGCCGGCGAGATTCTCGATGTGGTCGGCATCGGGATTGGCCCGTTCAACCTGAG CCTGGCTGCGTTGCTCGCCGAAGCCGGATACGACCGCACCGTATTTCTCGAACGCAAGCCGTATTTCAGCTGGCATCCCG GCATGCTGCTCGAGGGGACAACGCTGCAGGTGCCGTTTCTTGCCGATCTGGTCAGCCTGGTCGCGCCAACGAGCCGCTTC AGCTTTCTGAACTATCTGCAGGCCCACGACCGCCTTTACAAGTTCCTTTTCTTCGAGAACTTTCATATCCCTCGGCGGGA GTATGACCACTATTGCCAGTGGGTCAGCGGTCAATTGCCCAGCCTGCGGTTCGGTAGCGAGGTCACGCGTGTCGACGTGG TGGACGGTTGCTATCGCGTGACGGCGCGCGCAGGCAACAGCGAAAGCATCCACTACGCGCACAACCTTGTGCTCGGCACC GGCACGCAACCGTGGTTACCGGCGTGCCTGCATACGCTCGCACAGCGCTTCCCGGAAAAGGTGATGCACACCGCCGACTA CGCGCGACACTTCGATATCGCAGGCAAACAGCGTGTGCTGGTGCTGGGCTCCGGTCAGTCTGCCGCGGAAGTCATCCAGG CCCTGCTCAATCGACAGTGCGACGACGAGGCGCCGCAATGCGAGCTGGACTGGGTCACCCGGGCCCCGGGTTTCCTGGCG ATGGAATACTCGAAGCTGGGGCTTGAGCATTTCACGCCGGACTACACCGCTTACTTCCACGGGCTTGCGCAGAGCGTCAA GGATCGGGTAGTGCCGAAGCAGGGCCTGTTCTACAAGGGCATCAGTTCCAAAACGATCTCGGCGATCTACGACTGCCTGT ACCACCGCAGTGTCGGTGACGCCCCGCTGCCGGTTCACCTGCGCGCCTTGAGCGAACTGCGCCACGTGGAGCCGACCGCG AATGGGCGGCTCGATGCGCGGTTCACTCACCTGCAGACAGGCCACACGTTTTCCATTGTGGTCGACGCGATCATATCGGG CTCGGGCTACCGGTATACGTTGCCGTCGTTTCTCGATGGCCTGGGCGACCGTGTCCATTACGACGACATGAAACGGCTGA AGATCGACGCCGGTTATCGGGTCGAGCATCGTGGTCCCGGGCAGATCTTCATGCAGAACGGCGAACTGCACACGCACGGC ATCGGTGCGCCCGATTTGGGCCTCGGTGCTTGGCGGGCGGCGCACATTGCCAACCGGATTGCCGGGCATGAGCTGTATCG CCTGCCGTCGCGGGTGGCATTCCAGACGTTCGGGGCCGGCGCGGAACAATCACCATCGACCGCCGGCACGACACCCAGCC CCTCACATCAGACCATCGAGGCGATTTGA
Upstream 100 bases:
>100_bases AAATGACCTTGTTGAATCCGGCGACCGACATGTCACATACCACTGTCCTCATGCTGTCTCTAACACGCCTTGCCGCTGAA CCCAGCCTGGAGCCGCTGCG
Downstream 100 bases:
>100_bases TGAAAGCTCGCAAAACGTACGTGCTCATTCCGGTGATGCCGACACCGAATGGCCCGCTGCATCTTGGCCACATCGCGGGC CCGTTCCTCAAGATGGACAT
Product: siderophore biosynthesis oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MKPTACTTPAGEILDVVGIGIGPFNLSLAALLAEAGYDRTVFLERKPYFSWHPGMLLEGTTLQVPFLADLVSLVAPTSRF SFLNYLQAHDRLYKFLFFENFHIPRREYDHYCQWVSGQLPSLRFGSEVTRVDVVDGCYRVTARAGNSESIHYAHNLVLGT GTQPWLPACLHTLAQRFPEKVMHTADYARHFDIAGKQRVLVLGSGQSAAEVIQALLNRQCDDEAPQCELDWVTRAPGFLA MEYSKLGLEHFTPDYTAYFHGLAQSVKDRVVPKQGLFYKGISSKTISAIYDCLYHRSVGDAPLPVHLRALSELRHVEPTA NGRLDARFTHLQTGHTFSIVVDAIISGSGYRYTLPSFLDGLGDRVHYDDMKRLKIDAGYRVEHRGPGQIFMQNGELHTHG IGAPDLGLGAWRAAHIANRIAGHELYRLPSRVAFQTFGAGAEQSPSTAGTTPSPSHQTIEAI
Sequences:
>Translated_462_residues MKPTACTTPAGEILDVVGIGIGPFNLSLAALLAEAGYDRTVFLERKPYFSWHPGMLLEGTTLQVPFLADLVSLVAPTSRF SFLNYLQAHDRLYKFLFFENFHIPRREYDHYCQWVSGQLPSLRFGSEVTRVDVVDGCYRVTARAGNSESIHYAHNLVLGT GTQPWLPACLHTLAQRFPEKVMHTADYARHFDIAGKQRVLVLGSGQSAAEVIQALLNRQCDDEAPQCELDWVTRAPGFLA MEYSKLGLEHFTPDYTAYFHGLAQSVKDRVVPKQGLFYKGISSKTISAIYDCLYHRSVGDAPLPVHLRALSELRHVEPTA NGRLDARFTHLQTGHTFSIVVDAIISGSGYRYTLPSFLDGLGDRVHYDDMKRLKIDAGYRVEHRGPGQIFMQNGELHTHG IGAPDLGLGAWRAAHIANRIAGHELYRLPSRVAFQTFGAGAEQSPSTAGTTPSPSHQTIEAI >Mature_462_residues MKPTACTTPAGEILDVVGIGIGPFNLSLAALLAEAGYDRTVFLERKPYFSWHPGMLLEGTTLQVPFLADLVSLVAPTSRF SFLNYLQAHDRLYKFLFFENFHIPRREYDHYCQWVSGQLPSLRFGSEVTRVDVVDGCYRVTARAGNSESIHYAHNLVLGT GTQPWLPACLHTLAQRFPEKVMHTADYARHFDIAGKQRVLVLGSGQSAAEVIQALLNRQCDDEAPQCELDWVTRAPGFLA MEYSKLGLEHFTPDYTAYFHGLAQSVKDRVVPKQGLFYKGISSKTISAIYDCLYHRSVGDAPLPVHLRALSELRHVEPTA NGRLDARFTHLQTGHTFSIVVDAIISGSGYRYTLPSFLDGLGDRVHYDDMKRLKIDAGYRVEHRGPGQIFMQNGELHTHG IGAPDLGLGAWRAAHIANRIAGHELYRLPSRVAFQTFGAGAEQSPSTAGTTPSPSHQTIEAI
Specific function: Unknown
COG id: COG3486
COG function: function code Q; Lysine/ornithine N-monooxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51236; Mature: 51236
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPTACTTPAGEILDVVGIGIGPFNLSLAALLAEAGYDRTVFLERKPYFSWHPGMLLEGT CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCC TLQVPFLADLVSLVAPTSRFSFLNYLQAHDRLYKFLFFENFHIPRREYDHYCQWVSGQLP EEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC SLRFGSEVTRVDVVDGCYRVTARAGNSESIHYAHNLVLGTGTQPWLPACLHTLAQRFPEK CCCCCCCCEEEEHHHHHEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH VMHTADYARHFDIAGKQRVLVLGSGQSAAEVIQALLNRQCDDEAPQCELDWVTRAPGFLA HHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEE MEYSKLGLEHFTPDYTAYFHGLAQSVKDRVVPKQGLFYKGISSKTISAIYDCLYHRSVGD EHHHHHCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCC APLPVHLRALSELRHVEPTANGRLDARFTHLQTGHTFSIVVDAIISGSGYRYTLPSFLDG CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEECHHHHHH LGDRVHYDDMKRLKIDAGYRVEHRGPGQIFMQNGELHTHGIGAPDLGLGAWRAAHIANRI CCCCCCCCCHHEEEECCCEEEECCCCCEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHH AGHELYRLPSRVAFQTFGAGAEQSPSTAGTTPSPSHQTIEAI HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC >Mature Secondary Structure MKPTACTTPAGEILDVVGIGIGPFNLSLAALLAEAGYDRTVFLERKPYFSWHPGMLLEGT CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCC TLQVPFLADLVSLVAPTSRFSFLNYLQAHDRLYKFLFFENFHIPRREYDHYCQWVSGQLP EEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC SLRFGSEVTRVDVVDGCYRVTARAGNSESIHYAHNLVLGTGTQPWLPACLHTLAQRFPEK CCCCCCCCEEEEHHHHHEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH VMHTADYARHFDIAGKQRVLVLGSGQSAAEVIQALLNRQCDDEAPQCELDWVTRAPGFLA HHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEE MEYSKLGLEHFTPDYTAYFHGLAQSVKDRVVPKQGLFYKGISSKTISAIYDCLYHRSVGD EHHHHHCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCC APLPVHLRALSELRHVEPTANGRLDARFTHLQTGHTFSIVVDAIISGSGYRYTLPSFLDG CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEECHHHHHH LGDRVHYDDMKRLKIDAGYRVEHRGPGQIFMQNGELHTHGIGAPDLGLGAWRAAHIANRI CCCCCCCCCHHEEEECCCEEEECCCCCEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHH AGHELYRLPSRVAFQTFGAGAEQSPSTAGTTPSPSHQTIEAI HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11274118; 11481432 [H]