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The map label for this gene is pchR [H]

Identifier: 17546532

GI number: 17546532

Start: 1979151

End: 1980062

Strand: Reverse

Name: pchR [H]

Synonym: RSc1813

Alternate gene names: 17546532

Gene position: 1980062-1979151 (Counterclockwise)

Preceding gene: 17546540

Following gene: 17546529

Centisome position: 53.28

GC content: 62.39

Gene sequence:

>912_bases
ATGAATTGCCCGCGATCCCATTTCCGCCTGTTTCACCAGACGCTGCGGCAGACCAGCACCGGTGCCGGCGTCAAGCTCAA
CGACATCGATTGCACGCCGCAGGAAAATCAGCTGGTCGTGGCGGAATCGCTGCCCGGCCTCACGCTGTGCGTGCTGCTGG
AGGCCAGCGGCCATTCGATCCTGGCCGACCGCACCTGCATCCCGTTCACCTCGGACCAGGTGTTGCTGTCGTTTTCACCG
ACCGCCAGCGTGTCGGAAAATTATCTGCCCAGCCAGCAGAAACTGCGCGCGATCGACGCCCATTTCACAGCGGAGGCGCT
GGGCAAATTCGAGATGGCGGAGATCCGCCAGGTTTTCACCCGGATTGCCGCCGCGGCCAGCATCCGGCCGGCGGGACCGG
ACAGCTACCTCTATCAGCTTTGCGCGTCGCCGGCGATCCGCGCGATTGCCGAACAGATTTTCCGGTGCCGCGCGCTCGCG
GGTGTCCAGCAACTGTTTATGCACAGCAAGGCATTCGAATTGCTGTCATTGACGGTGGAAACATTGCTGACCTCGCTCGA
AGGCGGCAAACCGCAGACCATGCAGCGGCGCGATTACCGCAAGCTCGACCGCGCGCGCGAGCTGATGCTGGCCCGGCTCC
ACCACAACTGGTCGCTGGCCGAGCTGGCGCAGGCGGTCAACCTGAACGAGCGCAAGCTCAAGGAAGGCTTCAGGATGCTG
TACGGCAATTCGGTGCACGCTTATCTGCAGGAAAAGCGCATGCAGGCTGCCGCGCATCTGCTGACGCAGACCGAATTGAG
CATCACCGAGGTGGTGCTGCAGACGGGCTACGCCAATCCCAGCCATTTCTCCAAGTTGTTCCGGCGCTATTTCGGCATGT
CGCCACGGGAATACGCCCGGCAGAACCTCTAG

Upstream 100 bases:

>100_bases
GTGGGCCGCCACTGACCGACCGTTTTACCCCCGTTGGAATGTCGTGATCCGGACGCACGCAGGCTGGGCGTCCGTGCCAT
TTCGCCAAGCGAGTTTCGTG

Downstream 100 bases:

>100_bases
CCGCCGGCCGGGGCGGCACGAGGCTTCGGACCCGCTCGCCGGGACCCGTGGCGCGCCGCCTGGGCCAAGGGTGTTCAATG
GCCGGCCGGCTTGTCGCCAT

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNCPRSHFRLFHQTLRQTSTGAGVKLNDIDCTPQENQLVVAESLPGLTLCVLLEASGHSILADRTCIPFTSDQVLLSFSP
TASVSENYLPSQQKLRAIDAHFTAEALGKFEMAEIRQVFTRIAAAASIRPAGPDSYLYQLCASPAIRAIAEQIFRCRALA
GVQQLFMHSKAFELLSLTVETLLTSLEGGKPQTMQRRDYRKLDRARELMLARLHHNWSLAELAQAVNLNERKLKEGFRML
YGNSVHAYLQEKRMQAAAHLLTQTELSITEVVLQTGYANPSHFSKLFRRYFGMSPREYARQNL

Sequences:

>Translated_303_residues
MNCPRSHFRLFHQTLRQTSTGAGVKLNDIDCTPQENQLVVAESLPGLTLCVLLEASGHSILADRTCIPFTSDQVLLSFSP
TASVSENYLPSQQKLRAIDAHFTAEALGKFEMAEIRQVFTRIAAAASIRPAGPDSYLYQLCASPAIRAIAEQIFRCRALA
GVQQLFMHSKAFELLSLTVETLLTSLEGGKPQTMQRRDYRKLDRARELMLARLHHNWSLAELAQAVNLNERKLKEGFRML
YGNSVHAYLQEKRMQAAAHLLTQTELSITEVVLQTGYANPSHFSKLFRRYFGMSPREYARQNL
>Mature_303_residues
MNCPRSHFRLFHQTLRQTSTGAGVKLNDIDCTPQENQLVVAESLPGLTLCVLLEASGHSILADRTCIPFTSDQVLLSFSP
TASVSENYLPSQQKLRAIDAHFTAEALGKFEMAEIRQVFTRIAAAASIRPAGPDSYLYQLCASPAIRAIAEQIFRCRALA
GVQQLFMHSKAFELLSLTVETLLTSLEGGKPQTMQRRDYRKLDRARELMLARLHHNWSLAELAQAVNLNERKLKEGFRML
YGNSVHAYLQEKRMQAAAHLLTQTELSITEVVLQTGYANPSHFSKLFRRYFGMSPREYARQNL

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34130; Mature: 34130

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCPRSHFRLFHQTLRQTSTGAGVKLNDIDCTPQENQLVVAESLPGLTLCVLLEASGHSI
CCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEE
LADRTCIPFTSDQVLLSFSPTASVSENYLPSQQKLRAIDAHFTAEALGKFEMAEIRQVFT
EECCEECCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RIAAAASIRPAGPDSYLYQLCASPAIRAIAEQIFRCRALAGVQQLFMHSKAFELLSLTVE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLTSLEGGKPQTMQRRDYRKLDRARELMLARLHHNWSLAELAQAVNLNERKLKEGFRML
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
YGNSVHAYLQEKRMQAAAHLLTQTELSITEVVLQTGYANPSHFSKLFRRYFGMSPREYAR
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH
QNL
CCC
>Mature Secondary Structure
MNCPRSHFRLFHQTLRQTSTGAGVKLNDIDCTPQENQLVVAESLPGLTLCVLLEASGHSI
CCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEE
LADRTCIPFTSDQVLLSFSPTASVSENYLPSQQKLRAIDAHFTAEALGKFEMAEIRQVFT
EECCEECCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RIAAAASIRPAGPDSYLYQLCASPAIRAIAEQIFRCRALAGVQQLFMHSKAFELLSLTVE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLTSLEGGKPQTMQRRDYRKLDRARELMLARLHHNWSLAELAQAVNLNERKLKEGFRML
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
YGNSVHAYLQEKRMQAAAHLLTQTELSITEVVLQTGYANPSHFSKLFRRYFGMSPREYAR
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH
QNL
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]