Click here to switch to the map view.

The map label for this gene is intB [H]

Identifier: 17546213

GI number: 17546213

Start: 1598285

End: 1598986

Strand: Direct

Name: intB [H]

Synonym: RSc1494

Alternate gene names: 17546213

Gene position: 1598285-1598986 (Clockwise)

Preceding gene: 17546210

Following gene: 17546214

Centisome position: 43.01

GC content: 59.69

Gene sequence:

>702_bases
TTGAAGTACCGCTTCGCCGGCAAGGAAAAGCGGTTGTCCCTTGGGGTGTATCCCGAAGTCGGCCTGAAGGAAGCACGAGA
CAGGCGTGAGGATGCAAAGCGGCTGCTGGCTGATGGCGTTGATCCCTCGGTTGAACGCAGGGTCCAGAAGGTGGCCACGG
TTGAGCGGGCGGCAAGCAGCTTCGAGGCGGTAGCCCGCGAGTGGCACGCCAAGTACGCGCCGAGCTGGTCCGAGAGCAAT
GCCAAGAAGGTGCTGGCCCGCTTGGGGAACGACGTGTTCCCGGTATTGTTGTTCCCGACCAGAACGAAGACCGGCCGCGA
TAATAGCTTTGCTGTCATCCGTATGCGGCGCAGCGAGTTCTTGGCGCTTCGTTGGCAGGACGTCGAATTACAGGACCGCT
TTGTAAGACTCCACGACACGAAAAATGGTGATGCCCGCGACGTGCCGCTGTCCACCCGAGCAGCGTCCATGCTGGCCGGG
CTTCCTCGACACATTTCGGGCCAAGTGTTCCCCGTCAGTGCGGACGCCGTGAAAAAGTCGTATAGCACGCGCTGCGGTCC
GAATCAGCGTTGTGCGGTCGTATGCGCCATCGGCAAACAGGTGTTTCACACCCGGCCAGCTTCGCCTCGCGTTCTCGATG
TTCTTTTTTTCGACATCCCGCCTTTACATCACCCTTGCAGGGAATTTTCAAACGGGCGCTAA

Upstream 100 bases:

>100_bases
GGGGCAGGTCAACGCAAAGCCCTCCGAAAAGTCGATCCGGCTGTTTGATGGTGGTGGCTTATACATCGAGGTCTCGCCCT
CGGGGGGCAAGTGGTGGCGA

Downstream 100 bases:

>100_bases
GCGGGCGCTGTTCAGGATTTGCCGGCATGCCCATCGGGAATCCCCACGCACGCAGCGCAGAAGCCGACGCGACATCCATC
AATGCGCAACCCATCAATAA

Product: integrase-like protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKYRFAGKEKRLSLGVYPEVGLKEARDRREDAKRLLADGVDPSVERRVQKVATVERAASSFEAVAREWHAKYAPSWSESN
AKKVLARLGNDVFPVLLFPTRTKTGRDNSFAVIRMRRSEFLALRWQDVELQDRFVRLHDTKNGDARDVPLSTRAASMLAG
LPRHISGQVFPVSADAVKKSYSTRCGPNQRCAVVCAIGKQVFHTRPASPRVLDVLFFDIPPLHHPCREFSNGR

Sequences:

>Translated_233_residues
MKYRFAGKEKRLSLGVYPEVGLKEARDRREDAKRLLADGVDPSVERRVQKVATVERAASSFEAVAREWHAKYAPSWSESN
AKKVLARLGNDVFPVLLFPTRTKTGRDNSFAVIRMRRSEFLALRWQDVELQDRFVRLHDTKNGDARDVPLSTRAASMLAG
LPRHISGQVFPVSADAVKKSYSTRCGPNQRCAVVCAIGKQVFHTRPASPRVLDVLFFDIPPLHHPCREFSNGR
>Mature_233_residues
MKYRFAGKEKRLSLGVYPEVGLKEARDRREDAKRLLADGVDPSVERRVQKVATVERAASSFEAVAREWHAKYAPSWSESN
AKKVLARLGNDVFPVLLFPTRTKTGRDNSFAVIRMRRSEFLALRWQDVELQDRFVRLHDTKNGDARDVPLSTRAASMLAG
LPRHISGQVFPVSADAVKKSYSTRCGPNQRCAVVCAIGKQVFHTRPASPRVLDVLFFDIPPLHHPCREFSNGR

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=96, Percent_Identity=38.5416666666667, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 26328; Mature: 26328

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYRFAGKEKRLSLGVYPEVGLKEARDRREDAKRLLADGVDPSVERRVQKVATVERAASS
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
FEAVAREWHAKYAPSWSESNAKKVLARLGNDVFPVLLFPTRTKTGRDNSFAVIRMRRSEF
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCE
LALRWQDVELQDRFVRLHDTKNGDARDVPLSTRAASMLAGLPRHISGQVFPVSADAVKKS
EEEEECCCCHHHHEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHCCCEEECCHHHHHHH
YSTRCGPNQRCAVVCAIGKQVFHTRPASPRVLDVLFFDIPPLHHPCREFSNGR
HHCCCCCCCCEEEEEEHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHCCCC
>Mature Secondary Structure
MKYRFAGKEKRLSLGVYPEVGLKEARDRREDAKRLLADGVDPSVERRVQKVATVERAASS
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
FEAVAREWHAKYAPSWSESNAKKVLARLGNDVFPVLLFPTRTKTGRDNSFAVIRMRRSEF
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCE
LALRWQDVELQDRFVRLHDTKNGDARDVPLSTRAASMLAGLPRHISGQVFPVSADAVKKS
EEEEECCCCHHHHEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHCCCEEECCHHHHHHH
YSTRCGPNQRCAVVCAIGKQVFHTRPASPRVLDVLFFDIPPLHHPCREFSNGR
HHCCCCCCCCEEEEEEHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]