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The map label for this gene is omp85 [H]

Identifier: 17546131

GI number: 17546131

Start: 1511713

End: 1514010

Strand: Direct

Name: omp85 [H]

Synonym: RSc1412

Alternate gene names: 17546131

Gene position: 1511713-1514010 (Clockwise)

Preceding gene: 17546130

Following gene: 17546132

Centisome position: 40.68

GC content: 62.97

Gene sequence:

>2298_bases
TTGATCAGACAACATCGCTTCCCGCTCAGCATGCTGGCGGCTTCCGTGCTGACCGTTTGCGCCGGTCAGGCTCATGCAGT
GGAGCCGTTCGTCATCAAGGACATTCGCGTGGAGGGGGTGCAACGCGTCGAGCCCGGCACCGTATTCGGCTATCTGCCCG
TGAAGGTGGGTGAGACCTTCACCGACGACAAGGGCGCCGAATCGATCCGCGCGCTGTACAACACCGGTTTCTTCAAGGAT
GTACAGATCCGCGCCGAGGGCAACGTGCTGGTGGTGCGCGTGGAGGAGCGTCCGGCAATCTCCCAGCTGGAATTCATCGG
CATCAAGGAATTCGACAAGGACACGCTGCGCCGCTCGCTGCGCGGCGTGGGCGTGGCCGAGGCGCGCTACTACGACAAAT
CCCTGATCGACCGTGCCGAGCAGGAGCTCAAGCGCCAGTACGTCTCGCGCGGCTACTACGCCGCCGACGTGCAGACCACC
GTCACGCCAGTCGATGCCAACCGGGTGTCCGTCACGTTCACGGTGGATGAAGGCCCGGTCGCCAAGATCCGCCAGATCAA
CATCGTCGGCAACAAGGCCTTCTCCGAGGGCGACCTGCGCGACGAGATGCAGCTGTCCACGCCCAACTGGCTGTCGTGGT
ACACCAAGAACGACCTCTACTCCAAGCAGAAGCTGACGGCCGACCTGGAAGCGCTGCGCTCGTTCTACCTGGACCGCGGC
TACCTGGAATTCGCCATCGAATCGACCCAGGTGTCGATCACGCCGGACAAGAAGGACATCTACCTGACGCTGAACATCCA
CGAGGGTGAGCAGTACAAGGTGTCCGACATCAAGCTGACCGGCGAGCTGCTGTCCAAGCAGGCCGAGATGGAGAAGCTGA
TCAAGCTCAAGCAGGGTGACGTGTTCTCGTCGGCCAAGCTGTCGGCCACCACCAAGGCGATCACCGACCTGCTGGGCACG
TACGGCTACGCCTTCGCGACCATCAACCCGCAGCCGCAGATCAACCAGAAGGACCGCACGGTCGCGCTCACGCTGGTGGT
CGATCCGGGCCGCCGCGTGTACGTGCGCCGCGTGAACGTGGTTGGCAACAGCAAGACGCGCGACGAAGTGGTGCGCCGCG
AGATGCGCCAGATGGAGTCGTCGTGGTTCGACGGCGAGAAGCTGCAGCTCTCGCAGAACCGCATCAACCGCACCGGCTAC
TTCACCGACACCAACATCACCACCGAAGACGTGCCGGGCATGTCCGACCAGGTGGATGTCAACGTCAACGTGACCGAGAA
GCCGACCGGCCAGATCAGCCTGGGCGTGGGCTTCTCGTCGACCGACAAGCTGGTGCTGTCGGCCGGTATCCGCCAGGACA
ACGTGTTCGGCTCCGGGACCAGCCTGGGCCTGGACGTGAACACCTCCAAGTCCAACCGCACCATCTCCGTGACGCAGTAC
GACCCGTACTTCACGGTCGATGGCATCAGCCGCTCGACCGAGCTGTACTACCGCACGTACCGCCCGCTGTACTACACCGG
CGACCAGGACTACCGCATCGTGCAGCAGGGCGGCAACATCAAGTTCGGCGTGCCGTTCTCGGAAACCGATACCGTGTTCT
TCGGCATCGGCTACGAGCGCACGACCATCGACGTGACCTCCAACACGCCGTTGGTCTACCAGAACTACGTGGCCAAGAAC
GGCCGCATTTCGAACAACTTCCCGATCACCATCGGCTGGTCGAAGGACCAGCGCGACAGCGCCCTGGTGCCGACGCGCGG
CCGCTACCAGCAGGCCAACCTGGAGTTCGGCATTCCGGGCGGCGACCTGCAGTACTACCGTGCGTACTACCAGCACCAGT
ACTTCTATCCGGTGTCGAAGTCGTTCACGCTGGCGTTCAACAACGAGATCGGCTACGGCCACGGCTACGGCAACAAGGAC
TTCCCGGTCTTCAAGAACTACTACGCCGGCGGTATCGGCTCGGTGCGCGGCTACGAGACCAGCACGCTGGGCCCGCGCGA
CGCCAACGGCGTGGCCATCGGTGGCGCCAGCAAGTTCGTCGGCAACATGGAATTCATCTTCCCGCTGCCGGGCTCGGGCG
TGGACCGCACCGTCCGCCTGTTCACCTTCTTCGACTACGGCAACGTGTTCGCCGAAGGCCAGCCGTTCAAGGTCGGCGAC
ATGCGCTACTCCGCCGGTTTTGGCCTGTCGTGGCTGTCGCCGATCGGTCCTCTGAAGATCAGCATGGGCTTCCCGATCAA
GAGGAAGGCCGAAGACCAGACGCAACGCTTCCAGTTCCAGATCGGGACTGCATTCTAA

Upstream 100 bases:

>100_bases
TCGCCGGGTTGAACCATCGTTGCCGCAGGCGTGCGGAAACCCAGGGTTTTGAAAAACACTCGGAAGTGGATCCCGGCCGG
ATCCAATTTAGGGGATTAGA

Downstream 100 bases:

>100_bases
TGACCGCATCCATCATGAAATCCACGCGCATCACGTTGTCCCGCATGGGCGTGTCCGCTGCCTTCGCCGCGCTGGCCGCC
GCCAGCTTCGCGCTGCCGGC

Product: outer membrane signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 765; Mature: 765

Protein sequence:

>765_residues
MIRQHRFPLSMLAASVLTVCAGQAHAVEPFVIKDIRVEGVQRVEPGTVFGYLPVKVGETFTDDKGAESIRALYNTGFFKD
VQIRAEGNVLVVRVEERPAISQLEFIGIKEFDKDTLRRSLRGVGVAEARYYDKSLIDRAEQELKRQYVSRGYYAADVQTT
VTPVDANRVSVTFTVDEGPVAKIRQINIVGNKAFSEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLSKQAEMEKLIKLKQGDVFSSAKLSATTKAITDLLGT
YGYAFATINPQPQINQKDRTVALTLVVDPGRRVYVRRVNVVGNSKTRDEVVRREMRQMESSWFDGEKLQLSQNRINRTGY
FTDTNITTEDVPGMSDQVDVNVNVTEKPTGQISLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTISVTQY
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRIVQQGGNIKFGVPFSETDTVFFGIGYERTTIDVTSNTPLVYQNYVAKN
GRISNNFPITIGWSKDQRDSALVPTRGRYQQANLEFGIPGGDLQYYRAYYQHQYFYPVSKSFTLAFNNEIGYGHGYGNKD
FPVFKNYYAGGIGSVRGYETSTLGPRDANGVAIGGASKFVGNMEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPFKVGD
MRYSAGFGLSWLSPIGPLKISMGFPIKRKAEDQTQRFQFQIGTAF

Sequences:

>Translated_765_residues
MIRQHRFPLSMLAASVLTVCAGQAHAVEPFVIKDIRVEGVQRVEPGTVFGYLPVKVGETFTDDKGAESIRALYNTGFFKD
VQIRAEGNVLVVRVEERPAISQLEFIGIKEFDKDTLRRSLRGVGVAEARYYDKSLIDRAEQELKRQYVSRGYYAADVQTT
VTPVDANRVSVTFTVDEGPVAKIRQINIVGNKAFSEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLSKQAEMEKLIKLKQGDVFSSAKLSATTKAITDLLGT
YGYAFATINPQPQINQKDRTVALTLVVDPGRRVYVRRVNVVGNSKTRDEVVRREMRQMESSWFDGEKLQLSQNRINRTGY
FTDTNITTEDVPGMSDQVDVNVNVTEKPTGQISLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTISVTQY
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRIVQQGGNIKFGVPFSETDTVFFGIGYERTTIDVTSNTPLVYQNYVAKN
GRISNNFPITIGWSKDQRDSALVPTRGRYQQANLEFGIPGGDLQYYRAYYQHQYFYPVSKSFTLAFNNEIGYGHGYGNKD
FPVFKNYYAGGIGSVRGYETSTLGPRDANGVAIGGASKFVGNMEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPFKVGD
MRYSAGFGLSWLSPIGPLKISMGFPIKRKAEDQTQRFQFQIGTAF
>Mature_765_residues
MIRQHRFPLSMLAASVLTVCAGQAHAVEPFVIKDIRVEGVQRVEPGTVFGYLPVKVGETFTDDKGAESIRALYNTGFFKD
VQIRAEGNVLVVRVEERPAISQLEFIGIKEFDKDTLRRSLRGVGVAEARYYDKSLIDRAEQELKRQYVSRGYYAADVQTT
VTPVDANRVSVTFTVDEGPVAKIRQINIVGNKAFSEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLSKQAEMEKLIKLKQGDVFSSAKLSATTKAITDLLGT
YGYAFATINPQPQINQKDRTVALTLVVDPGRRVYVRRVNVVGNSKTRDEVVRREMRQMESSWFDGEKLQLSQNRINRTGY
FTDTNITTEDVPGMSDQVDVNVNVTEKPTGQISLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTISVTQY
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRIVQQGGNIKFGVPFSETDTVFFGIGYERTTIDVTSNTPLVYQNYVAKN
GRISNNFPITIGWSKDQRDSALVPTRGRYQQANLEFGIPGGDLQYYRAYYQHQYFYPVSKSFTLAFNNEIGYGHGYGNKD
FPVFKNYYAGGIGSVRGYETSTLGPRDANGVAIGGASKFVGNMEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPFKVGD
MRYSAGFGLSWLSPIGPLKISMGFPIKRKAEDQTQRFQFQIGTAF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=812, Percent_Identity=35.2216748768473, Blast_Score=486, Evalue=1e-138,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 85880; Mature: 85880

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRQHRFPLSMLAASVLTVCAGQAHAVEPFVIKDIRVEGVQRVEPGTVFGYLPVKVGETF
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEECCCCEEEEEEEEEECCCC
TDDKGAESIRALYNTGFFKDVQIRAEGNVLVVRVEERPAISQLEFIGIKEFDKDTLRRSL
CCCCCHHHHHHHHHCCCEEEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHH
RGVGVAEARYYDKSLIDRAEQELKRQYVSRGYYAADVQTTVTPVDANRVSVTFTVDEGPV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEEEECCCEEEEEEEECCCCC
AKIRQINIVGNKAFSEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
EEEEEEEEEECCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLSKQAEMEKLIKLKQGD
EEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEHHHHHHHHHHHHHHHHCCCC
VFSSAKLSATTKAITDLLGTYGYAFATINPQPQINQKDRTVALTLVVDPGRRVYVRRVNV
CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEE
VGNSKTRDEVVRREMRQMESSWFDGEKLQLSQNRINRTGYFTDTNITTEDVPGMSDQVDV
ECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCEEECCCCCCCCCCCCCCEEEE
NVNVTEKPTGQISLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTISVTQY
EEEECCCCCCEEEEECCCCCCCCEEEECCCCCCCEECCCCEEEEEEECCCCCCEEEEEEE
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRIVQQGGNIKFGVPFSETDTVFFGIGYER
CCEEEECCCCCCEEEEEEEECCEEEECCCCEEEEECCCCEEEECCCCCCCEEEEEECCEE
TTIDVTSNTPLVYQNYVAKNGRISNNFPITIGWSKDQRDSALVPTRGRYQQANLEFGIPG
EEEEEECCCCEEEEEEECCCCEECCCCCEEEECCCCCCCCCCCCCCCCCEECCEEECCCC
GDLQYYRAYYQHQYFYPVSKSFTLAFNNEIGYGHGYGNKDFPVFKNYYAGGIGSVRGYET
CCHHHHHHHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
STLGPRDANGVAIGGASKFVGNMEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPFKVGD
CCCCCCCCCCEEECCHHHHCCCEEEEEECCCCCCCCEEEEEEEEECCCEEECCCCEEECC
MRYSAGFGLSWLSPIGPLKISMGFPIKRKAEDQTQRFQFQIGTAF
EEEECCCCCHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MIRQHRFPLSMLAASVLTVCAGQAHAVEPFVIKDIRVEGVQRVEPGTVFGYLPVKVGETF
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEECCCCEEEEEEEEEECCCC
TDDKGAESIRALYNTGFFKDVQIRAEGNVLVVRVEERPAISQLEFIGIKEFDKDTLRRSL
CCCCCHHHHHHHHHCCCEEEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHH
RGVGVAEARYYDKSLIDRAEQELKRQYVSRGYYAADVQTTVTPVDANRVSVTFTVDEGPV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEEEECCCEEEEEEEECCCCC
AKIRQINIVGNKAFSEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
EEEEEEEEEECCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLSKQAEMEKLIKLKQGD
EEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEHHHHHHHHHHHHHHHHCCCC
VFSSAKLSATTKAITDLLGTYGYAFATINPQPQINQKDRTVALTLVVDPGRRVYVRRVNV
CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEE
VGNSKTRDEVVRREMRQMESSWFDGEKLQLSQNRINRTGYFTDTNITTEDVPGMSDQVDV
ECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCEEECCCCCCCCCCCCCCEEEE
NVNVTEKPTGQISLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTISVTQY
EEEECCCCCCEEEEECCCCCCCCEEEECCCCCCCEECCCCEEEEEEECCCCCCEEEEEEE
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRIVQQGGNIKFGVPFSETDTVFFGIGYER
CCEEEECCCCCCEEEEEEEECCEEEECCCCEEEEECCCCEEEECCCCCCCEEEEEECCEE
TTIDVTSNTPLVYQNYVAKNGRISNNFPITIGWSKDQRDSALVPTRGRYQQANLEFGIPG
EEEEEECCCCEEEEEEECCCCEECCCCCEEEECCCCCCCCCCCCCCCCCEECCEEECCCC
GDLQYYRAYYQHQYFYPVSKSFTLAFNNEIGYGHGYGNKDFPVFKNYYAGGIGSVRGYET
CCHHHHHHHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
STLGPRDANGVAIGGASKFVGNMEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPFKVGD
CCCCCCCCCCEEECCHHHHCCCEEEEEECCCCCCCCEEEEEEEEECCCEEECCCCEEECC
MRYSAGFGLSWLSPIGPLKISMGFPIKRKAEDQTQRFQFQIGTAF
EEEECCCCCHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]