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The map label for this gene is ypdA [H]

Identifier: 17546070

GI number: 17546070

Start: 1438276

End: 1439520

Strand: Direct

Name: ypdA [H]

Synonym: RSc1351

Alternate gene names: 17546070

Gene position: 1438276-1439520 (Clockwise)

Preceding gene: 17546069

Following gene: 17546071

Centisome position: 38.7

GC content: 71.65

Gene sequence:

>1245_bases
ATGCGGGATCGCCCACGCTTTGACCCGGCCACCCCGTCGAGTAAGATCGGCCGCATGCTTGCCAACGTGTCGCTGCCTCC
GCTTGCCGAGTGCCTGCGCATCGCCATGCGCGGGCTGCGCGCGTTCGCCTGGATCGTCGCCATCAATACCGGCATTGCCG
CCGTGCTGGCCTTCGGCATCAAGCCGGACGACACCTTCTGGCACGACCTCGTCTACAGCCAGGCGATCGGGCTGTCGATG
TGGCTGCTGATCGATATTCCGCGCCACCTGCTGTGGGGCAACGGTCCGCCCAGCCGGCGGGTCTTGCCCTGGATCGTGGT
GGCCGCGGTGCTGATCGGTGTGCCGTTCGGGCAGTGGGTGGCGCGGCGGATCCTGTGCACGGGCGACCAGCCCTGGCGCG
CCGACAGCCTGCGCATGAGCTTCATCATCGCCATGCTGGCGGCGCTGGGCGCGACGTATTTCTACTGGTCGCGCGGCAAG
CTGGCGACGCTGCAGCGGCAGGCCGCGCTGGACGCGCTGGAGCGCGAAGAGGCCGAGAAGCAGGTTGTGCGCGCGCAGCT
GATGGCGCTGCAGGCGCAGATCGAACCGCATTTCCTGTTCAACGCGCTGGCCCACGTGGACGTGCTGATCGCGCGCGATC
CGGCCGGCGCGCGTCGGCTGCTGCAGCACCTGATCGGCTTCCTGCGCACGTCGCTCGCGCATGCCCGCGCCGAGCAGTGC
ACGCTGGCGCAGGAGTTCGCGCTGCTGCGCGCGTATCTCGACATCCAGGCGCTGCGCTTCGGCGCGCGCCTGCGGTTCTC
GCTGGCGCTGGACGACGCCATCGCCGGCCTCGTCGTTCCGCCCATGCTGATCCAGCCGCTGGTGGAGAACGCCGTGGTGC
ACGGCATCGAGCCGTCGCGCGAGGGCGGCACGATCGCGCTATCCGCCCGGCGCGAGGGCGACAGGCTGCGGCTGGAGGTG
CGCGATACCGGCATCGGCTTCGGCCGGGACGCGGCCCCCGGCAAGGGCTCGGGCATGGGGCTCACGCATGTGCGCGAACG
GCTGGCGCGCCTGTTCGATGCCGATGCGCGCCTGACCATTGCCGAGACCATGCCGCACGGCGTGACCGTCACGGTGGAGC
TGCCGCTGGCGCACGACGCCGCTGGCGCGGATGCCTCCGGCGCCGCCGTGCCGCAATGGCGCTGCCGCTTCTCCCGGCCG
GCGGTCGCGCCCGCGCTGGCCCCGCGCGCTCCCGCCGGAACCTGA

Upstream 100 bases:

>100_bases
TGGCCGCACACGGCCTGGGCCTGGCGTGGGCGCTGGGCAGCGGCTACCGGCGCCTGGTGGACCGGGAACTCGCCCGGCTG
CGCAATCAGGCAGGCCGCTG

Downstream 100 bases:

>100_bases
CCGATGCCCATCGCTCCCCGCCTGCTGATTGCCGACGATGAACCGGCGCTGGCCGACAGCCTGATCGCCGAGCTTGCCGC
GCTGTGGCCCGGGGCCCGCA

Product: transmembrane sensor histidine kinase transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MRDRPRFDPATPSSKIGRMLANVSLPPLAECLRIAMRGLRAFAWIVAINTGIAAVLAFGIKPDDTFWHDLVYSQAIGLSM
WLLIDIPRHLLWGNGPPSRRVLPWIVVAAVLIGVPFGQWVARRILCTGDQPWRADSLRMSFIIAMLAALGATYFYWSRGK
LATLQRQAALDALEREEAEKQVVRAQLMALQAQIEPHFLFNALAHVDVLIARDPAGARRLLQHLIGFLRTSLAHARAEQC
TLAQEFALLRAYLDIQALRFGARLRFSLALDDAIAGLVVPPMLIQPLVENAVVHGIEPSREGGTIALSARREGDRLRLEV
RDTGIGFGRDAAPGKGSGMGLTHVRERLARLFDADARLTIAETMPHGVTVTVELPLAHDAAGADASGAAVPQWRCRFSRP
AVAPALAPRAPAGT

Sequences:

>Translated_414_residues
MRDRPRFDPATPSSKIGRMLANVSLPPLAECLRIAMRGLRAFAWIVAINTGIAAVLAFGIKPDDTFWHDLVYSQAIGLSM
WLLIDIPRHLLWGNGPPSRRVLPWIVVAAVLIGVPFGQWVARRILCTGDQPWRADSLRMSFIIAMLAALGATYFYWSRGK
LATLQRQAALDALEREEAEKQVVRAQLMALQAQIEPHFLFNALAHVDVLIARDPAGARRLLQHLIGFLRTSLAHARAEQC
TLAQEFALLRAYLDIQALRFGARLRFSLALDDAIAGLVVPPMLIQPLVENAVVHGIEPSREGGTIALSARREGDRLRLEV
RDTGIGFGRDAAPGKGSGMGLTHVRERLARLFDADARLTIAETMPHGVTVTVELPLAHDAAGADASGAAVPQWRCRFSRP
AVAPALAPRAPAGT
>Mature_414_residues
MRDRPRFDPATPSSKIGRMLANVSLPPLAECLRIAMRGLRAFAWIVAINTGIAAVLAFGIKPDDTFWHDLVYSQAIGLSM
WLLIDIPRHLLWGNGPPSRRVLPWIVVAAVLIGVPFGQWVARRILCTGDQPWRADSLRMSFIIAMLAALGATYFYWSRGK
LATLQRQAALDALEREEAEKQVVRAQLMALQAQIEPHFLFNALAHVDVLIARDPAGARRLLQHLIGFLRTSLAHARAEQC
TLAQEFALLRAYLDIQALRFGARLRFSLALDDAIAGLVVPPMLIQPLVENAVVHGIEPSREGGTIALSARREGDRLRLEV
RDTGIGFGRDAAPGKGSGMGLTHVRERLARLFDADARLTIAETMPHGVTVTVELPLAHDAAGADASGAAVPQWRCRFSRP
AVAPALAPRAPAGT

Specific function: Unknown

COG id: COG2972

COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=215, Percent_Identity=33.0232558139535, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1788446, Length=249, Percent_Identity=32.5301204819277, Blast_Score=121, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: NA

Molecular weight: Translated: 45189; Mature: 45189

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDRPRFDPATPSSKIGRMLANVSLPPLAECLRIAMRGLRAFAWIVAINTGIAAVLAFGI
CCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KPDDTFWHDLVYSQAIGLSMWLLIDIPRHLLWGNGPPSRRVLPWIVVAAVLIGVPFGQWV
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
ARRILCTGDQPWRADSLRMSFIIAMLAALGATYFYWSRGKLATLQRQAALDALEREEAEK
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHHHHH
QVVRAQLMALQAQIEPHFLFNALAHVDVLIARDPAGARRLLQHLIGFLRTSLAHARAEQC
HHHHHHHHHHHHHCCHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAQEFALLRAYLDIQALRFGARLRFSLALDDAIAGLVVPPMLIQPLVENAVVHGIEPSR
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
EGGTIALSARREGDRLRLEVRDTGIGFGRDAAPGKGSGMGLTHVRERLARLFDADARLTI
CCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEE
AETMPHGVTVTVELPLAHDAAGADASGAAVPQWRCRFSRPAVAPALAPRAPAGT
EECCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRDRPRFDPATPSSKIGRMLANVSLPPLAECLRIAMRGLRAFAWIVAINTGIAAVLAFGI
CCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KPDDTFWHDLVYSQAIGLSMWLLIDIPRHLLWGNGPPSRRVLPWIVVAAVLIGVPFGQWV
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
ARRILCTGDQPWRADSLRMSFIIAMLAALGATYFYWSRGKLATLQRQAALDALEREEAEK
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHHHHH
QVVRAQLMALQAQIEPHFLFNALAHVDVLIARDPAGARRLLQHLIGFLRTSLAHARAEQC
HHHHHHHHHHHHHCCHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAQEFALLRAYLDIQALRFGARLRFSLALDDAIAGLVVPPMLIQPLVENAVVHGIEPSR
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
EGGTIALSARREGDRLRLEVRDTGIGFGRDAAPGKGSGMGLTHVRERLARLFDADARLTI
CCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEE
AETMPHGVTVTVELPLAHDAAGADASGAAVPQWRCRFSRPAVAPALAPRAPAGT
EECCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]