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The map label for this gene is ypdB [C]

Identifier: 17546071

GI number: 17546071

Start: 1439524

End: 1440336

Strand: Direct

Name: ypdB [C]

Synonym: RSc1352

Alternate gene names: 17546071

Gene position: 1439524-1440336 (Clockwise)

Preceding gene: 17546070

Following gene: 17546072

Centisome position: 38.73

GC content: 72.2

Gene sequence:

>813_bases
ATGCCCATCGCTCCCCGCCTGCTGATTGCCGACGATGAACCGGCGCTGGCCGACAGCCTGATCGCCGAGCTTGCCGCGCT
GTGGCCCGGGGCCCGCATTGCGCCCGCGGTGCACGACGGGCAGTCCGCGCTGGATGCCATCGACCGGCCGCGCGCGGGCG
AGGCGCCCGATGTGGTCTTTCTCGACATCCGCATGCCGGGGCTGTCCGGCATCGAGGTGGCGCGCGAGCTGGCGGGCCGG
GCGCAGCGCCCGCTGGTGGTGTTCGTGACCGCCTACGACCAGTTCGCGCTCGACGCGTTCGAGCAGGCGGCCGTGGACTA
CGTGCTCAAGCCCGTGCAGACCGAACGCCTGGCCGCCACCGTCCGGCGCTTGACGGCGCGCCTGGCCGAGCGGCCGGACG
GCGGCGCGGCGGCCGATCCCGCGCAGACCCTGGCGCAACTGGTGGAGCGCCTCGCCGGGCTGCCGGCCGCGGGCGGCGCC
AACGGCGCCTATCTGCGGTTCATCAAGGCGCTGGTGGGGCAGGAGATCCGCTTTATCCCCGTGGAAGAGGTGCTGTACCT
CGAGGCGACCGACAAATACGTCAACGTGGTGACCCACGCCGGCGCGTCGCTGATCCGCACCAGCCTGCGCGAACTGCTGT
CGCAGCTCGACCCGCAGCACTTCTGGCAGGTGCATCGCGGCACGGTGGTGAACGTGGCGCACGTGGCCAGCGCCGTGCAC
CTGTCGCTCGGCCGACTGGCACTGAAGATCCGGGGCCGGACCGAGACGCTGCCGGTGGCGCGGCAGTACGCGCACCTGTT
CCGGCAGATGTAG

Upstream 100 bases:

>100_bases
GGATGCCTCCGGCGCCGCCGTGCCGCAATGGCGCTGCCGCTTCTCCCGGCCGGCGGTCGCGCCCGCGCTGGCCCCGCGCG
CTCCCGCCGGAACCTGACCG

Downstream 100 bases:

>100_bases
CGTCCCCATTCGGGGGTGTGCGCGGGCCGTCCTTCCGCTATGCTCGGTTGTATCGTCAACGAATCGATAGCGAGACGACC
CGCCATGGAGACAGCCGTTG

Product: two-component response regulator transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MPIAPRLLIADDEPALADSLIAELAALWPGARIAPAVHDGQSALDAIDRPRAGEAPDVVFLDIRMPGLSGIEVARELAGR
AQRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAATVRRLTARLAERPDGGAAADPAQTLAQLVERLAGLPAAGGA
NGAYLRFIKALVGQEIRFIPVEEVLYLEATDKYVNVVTHAGASLIRTSLRELLSQLDPQHFWQVHRGTVVNVAHVASAVH
LSLGRLALKIRGRTETLPVARQYAHLFRQM

Sequences:

>Translated_270_residues
MPIAPRLLIADDEPALADSLIAELAALWPGARIAPAVHDGQSALDAIDRPRAGEAPDVVFLDIRMPGLSGIEVARELAGR
AQRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAATVRRLTARLAERPDGGAAADPAQTLAQLVERLAGLPAAGGA
NGAYLRFIKALVGQEIRFIPVEEVLYLEATDKYVNVVTHAGASLIRTSLRELLSQLDPQHFWQVHRGTVVNVAHVASAVH
LSLGRLALKIRGRTETLPVARQYAHLFRQM
>Mature_269_residues
PIAPRLLIADDEPALADSLIAELAALWPGARIAPAVHDGQSALDAIDRPRAGEAPDVVFLDIRMPGLSGIEVARELAGRA
QRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAATVRRLTARLAERPDGGAAADPAQTLAQLVERLAGLPAAGGAN
GAYLRFIKALVGQEIRFIPVEEVLYLEATDKYVNVVTHAGASLIRTSLRELLSQLDPQHFWQVHRGTVVNVAHVASAVHL
SLGRLALKIRGRTETLPVARQYAHLFRQM

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=265, Percent_Identity=26.4150943396226, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082052, Length=259, Percent_Identity=29.7297297297297, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29232; Mature: 29101

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIAPRLLIADDEPALADSLIAELAALWPGARIAPAVHDGQSALDAIDRPRAGEAPDVVF
CCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEE
LDIRMPGLSGIEVARELAGRAQRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAAT
EEEECCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VRRLTARLAERPDGGAAADPAQTLAQLVERLAGLPAAGGANGAYLRFIKALVGQEIRFIP
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEE
VEEVLYLEATDKYVNVVTHAGASLIRTSLRELLSQLDPQHFWQVHRGTVVNVAHVASAVH
HHHEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH
LSLGRLALKIRGRTETLPVARQYAHLFRQM
HHHHHHEEEECCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PIAPRLLIADDEPALADSLIAELAALWPGARIAPAVHDGQSALDAIDRPRAGEAPDVVF
CCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEE
LDIRMPGLSGIEVARELAGRAQRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAAT
EEEECCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VRRLTARLAERPDGGAAADPAQTLAQLVERLAGLPAAGGANGAYLRFIKALVGQEIRFIP
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEE
VEEVLYLEATDKYVNVVTHAGASLIRTSLRELLSQLDPQHFWQVHRGTVVNVAHVASAVH
HHHEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH
LSLGRLALKIRGRTETLPVARQYAHLFRQM
HHHHHHEEEECCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA