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The map label for this gene is ydhO [H]

Identifier: 17546033

GI number: 17546033

Start: 1399060

End: 1399836

Strand: Reverse

Name: ydhO [H]

Synonym: RSc1314

Alternate gene names: 17546033

Gene position: 1399836-1399060 (Counterclockwise)

Preceding gene: 17546034

Following gene: 17546023

Centisome position: 37.67

GC content: 71.04

Gene sequence:

>777_bases
ATGCCGAACCGGCACGGTTCTCCGCGCAGCAGCACGCGGTGGGCGGGCCTCGCGATCATCGCGCTGGCCTGCCTGCTGTC
CGCCTGCTCCTCCACGCCCACCCGCTCCCTCACCTCGCGTGACACGTCGGGGCAGCGCACGCACGGTGCGGCGATCAACG
ATCCGAGTGCCGGGCTGGAAGAAATCTCCATCGAAGCGATGGCGCTGGTCGGCACGCCATACCGCTACGGCGGCAACACG
CCCGACAGCGGCTTCGACTGCAGCGGACTGGTGCGCTACGTCGTGCAGCGCGCCGCCTCGGTCAACCTGCCGCGCACGGC
GGCGGAAATGGGCACGCGCGGCTTCGCGCTCGAGCGCCGCGACGTCGCATCAGGCGACCTGGTCTTCTTCAACACGACCG
GCCGGCCGAATTCCCACGTCGGCATCTATGTGGGCCAGAACCGCTTCGTGCATGCGCCGGCCACCGGCGGCACCGTCCGG
CTGGAAGACATGAGCAAGCGCTACTGGGCGAGCCGTTACATGGGCGCGCGCCGCGTGGTCGCGGTCAGCAACCTGCCCGA
CTTGCCCGCGTCCCCCGCTGCCGCCACGCAAAGCATCGCCGCCGGTGCGGCCGCACCCGCCACCGCGCCAGCCCACGCGA
ACGACGACGACCCGCTTGGCACACTGGCGCGCGCCCGCGGCACGGAATCCTCGCCCCTGATGTCGACGCGCAACGCTGCG
CCGGTTGTCGTACCGCCCGCGGACGATGACCCGATCGCACGCTTCGCCACGCAATAA

Upstream 100 bases:

>100_bases
GACCCGCACCGCGTCTGGCGTTGCGCCCTGCCAACACGCGGTTTGGCTTTCCCACGCGGGGCGCATAGCATGCGAGCTAT
CCGGACTTCATCGATCGCCC

Downstream 100 bases:

>100_bases
GCGCCTGCTGCACCAAACAAAACGCCCACCGGATGGTGGGCGTTTCTGTTTGAACGGCTGCGGCAGGTTCAGAGCAACTG
CCGTCCGATCCACCAGGCGA

Product: lipoprotein transmembrane

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MPNRHGSPRSSTRWAGLAIIALACLLSACSSTPTRSLTSRDTSGQRTHGAAINDPSAGLEEISIEAMALVGTPYRYGGNT
PDSGFDCSGLVRYVVQRAASVNLPRTAAEMGTRGFALERRDVASGDLVFFNTTGRPNSHVGIYVGQNRFVHAPATGGTVR
LEDMSKRYWASRYMGARRVVAVSNLPDLPASPAAATQSIAAGAAAPATAPAHANDDDPLGTLARARGTESSPLMSTRNAA
PVVVPPADDDPIARFATQ

Sequences:

>Translated_258_residues
MPNRHGSPRSSTRWAGLAIIALACLLSACSSTPTRSLTSRDTSGQRTHGAAINDPSAGLEEISIEAMALVGTPYRYGGNT
PDSGFDCSGLVRYVVQRAASVNLPRTAAEMGTRGFALERRDVASGDLVFFNTTGRPNSHVGIYVGQNRFVHAPATGGTVR
LEDMSKRYWASRYMGARRVVAVSNLPDLPASPAAATQSIAAGAAAPATAPAHANDDDPLGTLARARGTESSPLMSTRNAA
PVVVPPADDDPIARFATQ
>Mature_257_residues
PNRHGSPRSSTRWAGLAIIALACLLSACSSTPTRSLTSRDTSGQRTHGAAINDPSAGLEEISIEAMALVGTPYRYGGNTP
DSGFDCSGLVRYVVQRAASVNLPRTAAEMGTRGFALERRDVASGDLVFFNTTGRPNSHVGIYVGQNRFVHAPATGGTVRL
EDMSKRYWASRYMGARRVVAVSNLPDLPASPAAATQSIAAGAAAPATAPAHANDDDPLGTLARARGTESSPLMSTRNAAP
VVVPPADDDPIARFATQ

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=119, Percent_Identity=46.218487394958, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1786421, Length=131, Percent_Identity=37.4045801526718, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1788501, Length=184, Percent_Identity=34.7826086956522, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788001, Length=124, Percent_Identity=37.0967741935484, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 26946; Mature: 26815

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNRHGSPRSSTRWAGLAIIALACLLSACSSTPTRSLTSRDTSGQRTHGAAINDPSAGLE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHH
EISIEAMALVGTPYRYGGNTPDSGFDCSGLVRYVVQRAASVNLPRTAAEMGTRGFALERR
HHHHEEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECC
DVASGDLVFFNTTGRPNSHVGIYVGQNRFVHAPATGGTVRLEDMSKRYWASRYMGARRVV
CCCCCCEEEEECCCCCCCEEEEEECCCEEEECCCCCCEEEHHHHHHHHHHHHHCCCEEEE
AVSNLPDLPASPAAATQSIAAGAAAPATAPAHANDDDPLGTLARARGTESSPLMSTRNAA
EECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
PVVVPPADDDPIARFATQ
CEEECCCCCCHHHHHCCC
>Mature Secondary Structure 
PNRHGSPRSSTRWAGLAIIALACLLSACSSTPTRSLTSRDTSGQRTHGAAINDPSAGLE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHH
EISIEAMALVGTPYRYGGNTPDSGFDCSGLVRYVVQRAASVNLPRTAAEMGTRGFALERR
HHHHEEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECC
DVASGDLVFFNTTGRPNSHVGIYVGQNRFVHAPATGGTVRLEDMSKRYWASRYMGARRVV
CCCCCCEEEEECCCCCCCEEEEEECCCEEEECCCCCCEEEHHHHHHHHHHHHHCCCEEEE
AVSNLPDLPASPAAATQSIAAGAAAPATAPAHANDDDPLGTLARARGTESSPLMSTRNAA
EECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
PVVVPPADDDPIARFATQ
CEEECCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]