| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is iolC [H]
Identifier: 17545959
GI number: 17545959
Start: 1313587
End: 1315539
Strand: Reverse
Name: iolC [H]
Synonym: RSc1240
Alternate gene names: 17545959
Gene position: 1315539-1313587 (Counterclockwise)
Preceding gene: 17545969
Following gene: 17545958
Centisome position: 35.4
GC content: 69.99
Gene sequence:
>1953_bases ATGAGCCCGTTGAACTTTCCGAGTGACCGCCCCATCGATCTGGCCTGCCTGGGCCGGGTTGCCGTGGACCTGTATGCGCA GCAGATCGGCAGCCGCCTGGAAGACGCGCGCAGCTTCCAGATGTATCTGGGCGGCTCGTCCGGCAACGTGGCGTTCGGCG TGGCGCGGCTGGGCCTGAAAACCGCGATGATCTCGCGCGTCGGCGACGAGCAGATGGGCCGCTTCCTGCGTGAAACCCTG GAACGCGAGGGCTGCGACACCAGCCAGCTCCAGACCGATCCGGAGCGCCTCACCGCGCTGGTGCTGCTCGGGCTGAAAGA CCGCGACACCTTCCCGCTGCTGTTCGTGCGAGAGAACTGTGCCGACATGGCCGTGCGCGCCGACGGCATCGACGAGGGCT TCATCGCCGGCTGCCGCGCGCTGGCGATCACGGGCACCCACCTGTCGACGCCCACCACGCGCGAGGCCTCGCTGACAGCG CTCGCCTACGCCCGCCGCCACGGCGCCGTGCGCATCCTGGATATCGACTACCGGCCGGTGCTGTGGGGCCTGACCAGCCG CGGCGCCGGCGAACACCGCTACGTGCCCGATGCGCACGTGACGCGGCAATTGCAGCAGGCGCTCGGCGAGTTCGACCTCC TGGTCGGCACCGAAGAGGAATTCCTGATCGCCGGCGGCGTGCCGCGCGATCTGATGGCCTCGCTGCGCGCGGTCCGCCAG ATCTCGGGCGCGGTGCTGGTCGTCAAGCGCGGCGCGCTCGGCTGCTGCGTGATCGAAGGCGCGGTTCCCGAGCGCATCGA AGACGCGCCCACTTTCCCCGGCGAGCGCGTCGAAGTGCTCAACGTGCTCGGCGCCGGCGACGCGTTCCTGTCGGGGTTGC TCTCGGGACTGCTGCGCGGCAAGGGCTGGGCGGAATCCGCCCGCATCGCCAATGCGTGCGGCGCGATCGTCGTGTCGCGC CACGCGTGTTCGGCCGCCATGCCGACGCCCGCGGAACTCGCGCACTGGTTCGGCGGCAGCCGCCATCCCGGCGTCGACGC CGATCGCGAGCTCGCCCACCTGCATCGCGTGACGGTGGCCCGTCCCCATTGGGACGACCTGTGCGTGATGGCCTTCGACC ACCGCAGCCAGTTCTACGATCTGGCCGTCCAGGCCGGCGCCGGCGAATCCCGCATCAAGACGCTCAAGCAACTGCTGGTG CGCGCCGCCGAGCAGGTCGAGCGCGAGCGCGCCCTTCACGGCCACGTCGGCGTGCTGATCGACGGCGGCGCTTACGGCAG CGACGCACTCGCCTCGGCAACCGGGCGCGGCTGGTGGGTCGGGCGCCCCGTGGAACTGCCGGGCTCCCGTCCGCTGCGCT TCGATGACACACGCTCGGTCGGCTCCGCGCTCATTCACTGGCCGACGGAACAGGTCGTCAAGTGCCTCGTGCACTACCAC CCGGACGATCCGGCAACGCTGCGCGTGGACCAGGAGCAGAAAGTGCTCGAACTCTGGGAAGCCACCCGCGAGAGCGGCAA CGAACTGCTGCTGGAGATCATTCCGCCGCGCCCGTTCACGCTGGCCGGCACCGAAGACGATGCCGTGCTGCGCACGGTCG CGCGCGTCTACAACCTGGGCGTCCGCCCCGAATGGTGGAAGCTCGCGCCCATGAGCGCCGACGGCTGGACGCAGCTCGAG GCGCTCATCACCGAACGCGACGCGCACTGCCGAGGCGCGGTGATCCTCGGGCTGAACCAGCCGCTGCAATATCTGGTCGA CAGCTTCCGCTCGGCAACCAACCCGATCGTCAAGGGCTTCATGGTCGGGCGCACGCTGTGGGCAGACGCCTCGCTGAAAT GGCTGCGCGGCGACATCTCCGACCAGGCATTCATCGACGAGGTGGCAGGCAACTTTGCCCAACTGGCCGATGCGTGGCTG GGCCGCCGCGCCGACGCCCGCTCCGCCGCCTGA
Upstream 100 bases:
>100_bases TGTCCGTTGCGGCAAGCACGCTCCCAAGACGGCCATCCGCCCAACCGGCCCTCAACCTGTCGGTGCATCCGCGCGCCGGC CGCGAGCATGACGAGTGGAC
Downstream 100 bases:
>100_bases CCCGCCCGACCATCACGAGAGACGAATTCGACAGTGAAAACCACCGTGAGACTGACCGTCAGCCAGGCGCTGGTCCGCTA TCTGGCCGCGCTGCGGGCCG
Product: transferase kinase
Products: NA
Alternate protein names: 2-deoxy-5-keto-D-gluconate kinase 1; DKG kinase 1 [H]
Number of amino acids: Translated: 650; Mature: 649
Protein sequence:
>650_residues MSPLNFPSDRPIDLACLGRVAVDLYAQQIGSRLEDARSFQMYLGGSSGNVAFGVARLGLKTAMISRVGDEQMGRFLRETL EREGCDTSQLQTDPERLTALVLLGLKDRDTFPLLFVRENCADMAVRADGIDEGFIAGCRALAITGTHLSTPTTREASLTA LAYARRHGAVRILDIDYRPVLWGLTSRGAGEHRYVPDAHVTRQLQQALGEFDLLVGTEEEFLIAGGVPRDLMASLRAVRQ ISGAVLVVKRGALGCCVIEGAVPERIEDAPTFPGERVEVLNVLGAGDAFLSGLLSGLLRGKGWAESARIANACGAIVVSR HACSAAMPTPAELAHWFGGSRHPGVDADRELAHLHRVTVARPHWDDLCVMAFDHRSQFYDLAVQAGAGESRIKTLKQLLV RAAEQVERERALHGHVGVLIDGGAYGSDALASATGRGWWVGRPVELPGSRPLRFDDTRSVGSALIHWPTEQVVKCLVHYH PDDPATLRVDQEQKVLELWEATRESGNELLLEIIPPRPFTLAGTEDDAVLRTVARVYNLGVRPEWWKLAPMSADGWTQLE ALITERDAHCRGAVILGLNQPLQYLVDSFRSATNPIVKGFMVGRTLWADASLKWLRGDISDQAFIDEVAGNFAQLADAWL GRRADARSAA
Sequences:
>Translated_650_residues MSPLNFPSDRPIDLACLGRVAVDLYAQQIGSRLEDARSFQMYLGGSSGNVAFGVARLGLKTAMISRVGDEQMGRFLRETL EREGCDTSQLQTDPERLTALVLLGLKDRDTFPLLFVRENCADMAVRADGIDEGFIAGCRALAITGTHLSTPTTREASLTA LAYARRHGAVRILDIDYRPVLWGLTSRGAGEHRYVPDAHVTRQLQQALGEFDLLVGTEEEFLIAGGVPRDLMASLRAVRQ ISGAVLVVKRGALGCCVIEGAVPERIEDAPTFPGERVEVLNVLGAGDAFLSGLLSGLLRGKGWAESARIANACGAIVVSR HACSAAMPTPAELAHWFGGSRHPGVDADRELAHLHRVTVARPHWDDLCVMAFDHRSQFYDLAVQAGAGESRIKTLKQLLV RAAEQVERERALHGHVGVLIDGGAYGSDALASATGRGWWVGRPVELPGSRPLRFDDTRSVGSALIHWPTEQVVKCLVHYH PDDPATLRVDQEQKVLELWEATRESGNELLLEIIPPRPFTLAGTEDDAVLRTVARVYNLGVRPEWWKLAPMSADGWTQLE ALITERDAHCRGAVILGLNQPLQYLVDSFRSATNPIVKGFMVGRTLWADASLKWLRGDISDQAFIDEVAGNFAQLADAWL GRRADARSAA >Mature_649_residues SPLNFPSDRPIDLACLGRVAVDLYAQQIGSRLEDARSFQMYLGGSSGNVAFGVARLGLKTAMISRVGDEQMGRFLRETLE REGCDTSQLQTDPERLTALVLLGLKDRDTFPLLFVRENCADMAVRADGIDEGFIAGCRALAITGTHLSTPTTREASLTAL AYARRHGAVRILDIDYRPVLWGLTSRGAGEHRYVPDAHVTRQLQQALGEFDLLVGTEEEFLIAGGVPRDLMASLRAVRQI SGAVLVVKRGALGCCVIEGAVPERIEDAPTFPGERVEVLNVLGAGDAFLSGLLSGLLRGKGWAESARIANACGAIVVSRH ACSAAMPTPAELAHWFGGSRHPGVDADRELAHLHRVTVARPHWDDLCVMAFDHRSQFYDLAVQAGAGESRIKTLKQLLVR AAEQVERERALHGHVGVLIDGGAYGSDALASATGRGWWVGRPVELPGSRPLRFDDTRSVGSALIHWPTEQVVKCLVHYHP DDPATLRVDQEQKVLELWEATRESGNELLLEIIPPRPFTLAGTEDDAVLRTVARVYNLGVRPEWWKLAPMSADGWTQLEA LITERDAHCRGAVILGLNQPLQYLVDSFRSATNPIVKGFMVGRTLWADASLKWLRGDISDQAFIDEVAGNFAQLADAWLG RRADARSAA
Specific function: Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5- dehydro-2-deoxy-D-gluconate (DKGP) [H]
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR022841 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.92 [H]
Molecular weight: Translated: 70882; Mature: 70750
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPLNFPSDRPIDLACLGRVAVDLYAQQIGSRLEDARSFQMYLGGSSGNVAFGVARLGLK CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEHHHHHHHHH TAMISRVGDEQMGRFLRETLEREGCDTSQLQTDPERLTALVLLGLKDRDTFPLLFVRENC HHHHHHCCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHEEECCCCCCCCEEEEECCC ADMAVRADGIDEGFIAGCRALAITGTHLSTPTTREASLTALAYARRHGAVRILDIDYRPV HHHEEECCCCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCE LWGLTSRGAGEHRYVPDAHVTRQLQQALGEFDLLVGTEEEFLIAGGVPRDLMASLRAVRQ EEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCEEEECCCCHHHHHHHHHHHH ISGAVLVVKRGALGCCVIEGAVPERIEDAPTFPGERVEVLNVLGAGDAFLSGLLSGLLRG HCCEEEEEECCCCEEEEECCCCCHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC KGWAESARIANACGAIVVSRHACSAAMPTPAELAHWFGGSRHPGVDADRELAHLHRVTVA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC RPHWDDLCVMAFDHRSQFYDLAVQAGAGESRIKTLKQLLVRAAEQVERERALHGHVGVLI CCCCCCEEEEEECCCCHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE DGGAYGSDALASATGRGWWVGRPVELPGSRPLRFDDTRSVGSALIHWPTEQVVKCLVHYH ECCCCCCHHHHHCCCCCEECCCCEECCCCCCCCCCCCHHHHHHEEECCHHHHHHHHHHCC PDDPATLRVDQEQKVLELWEATRESGNELLLEIIPPRPFTLAGTEDDAVLRTVARVYNLG CCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHCC VRPEWWKLAPMSADGWTQLEALITERDAHCRGAVILGLNQPLQYLVDSFRSATNPIVKGF CCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH MVGRTLWADASLKWLRGDISDQAFIDEVAGNFAQLADAWLGRRADARSAA HHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SPLNFPSDRPIDLACLGRVAVDLYAQQIGSRLEDARSFQMYLGGSSGNVAFGVARLGLK CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEHHHHHHHHH TAMISRVGDEQMGRFLRETLEREGCDTSQLQTDPERLTALVLLGLKDRDTFPLLFVRENC HHHHHHCCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHEEECCCCCCCCEEEEECCC ADMAVRADGIDEGFIAGCRALAITGTHLSTPTTREASLTALAYARRHGAVRILDIDYRPV HHHEEECCCCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCE LWGLTSRGAGEHRYVPDAHVTRQLQQALGEFDLLVGTEEEFLIAGGVPRDLMASLRAVRQ EEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCEEEECCCCHHHHHHHHHHHH ISGAVLVVKRGALGCCVIEGAVPERIEDAPTFPGERVEVLNVLGAGDAFLSGLLSGLLRG HCCEEEEEECCCCEEEEECCCCCHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC KGWAESARIANACGAIVVSRHACSAAMPTPAELAHWFGGSRHPGVDADRELAHLHRVTVA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC RPHWDDLCVMAFDHRSQFYDLAVQAGAGESRIKTLKQLLVRAAEQVERERALHGHVGVLI CCCCCCEEEEEECCCCHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE DGGAYGSDALASATGRGWWVGRPVELPGSRPLRFDDTRSVGSALIHWPTEQVVKCLVHYH ECCCCCCHHHHHCCCCCEECCCCEECCCCCCCCCCCCHHHHHHEEECCHHHHHHHHHHCC PDDPATLRVDQEQKVLELWEATRESGNELLLEIIPPRPFTLAGTEDDAVLRTVARVYNLG CCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHCC VRPEWWKLAPMSADGWTQLEALITERDAHCRGAVILGLNQPLQYLVDSFRSATNPIVKGF CCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH MVGRTLWADASLKWLRGDISDQAFIDEVAGNFAQLADAWLGRRADARSAA HHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA