Click here to switch to the map view.

The map label for this gene is rodZ [H]

Identifier: 17545933

GI number: 17545933

Start: 1282576

End: 1283679

Strand: Direct

Name: rodZ [H]

Synonym: RSc1214

Alternate gene names: 17545933

Gene position: 1282576-1283679 (Clockwise)

Preceding gene: 17545932

Following gene: 17545934

Centisome position: 34.51

GC content: 71.11

Gene sequence:

>1104_bases
ATGACTGACCGCGATGCGGCGAACACCGGCGATCTTGCGCCAGGGGGCTCGCCTGCCGAGCCTTCCGCGGTGTCGCACGA
CCGTGATGATGCGTTGCGCCAGATCGCCGGGCGCCTGCGTGCTGGCCGCGAAAGCCAGCGCCTGACGATCGAGGATCTTG
CGACGCGCCTGAAAGTGGCGCCGGCCAAGCTGCTGGCGGTGGAGTCCGGCGACGTCAGCGCGTTGCCGGACATGACGTTT
GCCAAGGGCCTGATCCGCACGTACGCACGCGTACTGCAGGTCGATGTCGACGACCAGCTCGCGCGCCTCAACGTGCGCGT
GCAGGTCGCCAACATCGGCTTGCGCCCGGAGGGCGGCCTTGGGAAGACGTTTTCCGACAAGCCGAGCTTTGCCGCGCGCC
GCACCGGCAGCCGCTGGCTGATCGGCTTGCTGGTGGCCGTGGTGGTGATCGGCGGGGCGCTGGCGGGTATGGACCGGCTC
AAGCAATGGCTGGCTTCCCACGCGCCGGAAACCACGCAAGCACCTGCCGGGCCGGCCGCAAAGGCACCCGCCGCGACCGA
ACCGGCGCCCGCTGGCGCGGAAGCCTCGTCGGCACCTGCCGCCACGTCGGGCCCGGCGGAAGCGCCTGCCGCGTCGATGC
CGACGCCGCTGACGCCTGCCACGCCCACCGAGCCGGCTTCCGGCACCGTGACAGCGCCGCTGGCGCCGCCGCCGACGTTG
CCGCGTTCCGATGCGGGCGCCATGGCGGCACCTGCCACCGCAGTGGATGCCACTAGGCCGGCCGTCGTCAGCGTCGATGC
GTCGTCGGTTCCTGCCGTGCCTGCCGCCGAGGTGGCCAGCAAGCGAGCCGTCGGCAATGCCGCCGGCAGCGCGCTGTCGG
TGCGCTTCTCGGGCGCTTCGTGGTACGAGATCAAGGATAAGTCGGGCAAGACGCTGGTCAGCGGCCTGGCGAGGGACGGC
GATGCGCGGGACGTGAACGGCACGCCGCCGTTCAAGGTCGTTTTCGGCAATGCCGAAGCGGTCGAGTCGCTGACCGTGTC
CGGCGCACCGGTCGATATCCGGAAGTACGCCCGCAATCGCGTGGCGCGCGCCACGCTGCCCTGA

Upstream 100 bases:

>100_bases
CGCCTGGGCGATGTTTCGCAGCAGAATGCGTGGAGCGCGCAGCTGCAGCGCCGTTTCCCCAATGCGCCCGAAGAGGCGGC
TTTCGAGAGAGGAGCGTGGG

Downstream 100 bases:

>100_bases
ACCGTTTTTGTTGAACGGCGCCCGCGCACTGTCGGCGCGGCGCCTTGCCAGATCATGCAGATGACTACGCCCGTCGATTG
CGCTCCCGCCTTGCCCGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTDRDAANTGDLAPGGSPAEPSAVSHDRDDALRQIAGRLRAGRESQRLTIEDLATRLKVAPAKLLAVESGDVSALPDMTF
AKGLIRTYARVLQVDVDDQLARLNVRVQVANIGLRPEGGLGKTFSDKPSFAARRTGSRWLIGLLVAVVVIGGALAGMDRL
KQWLASHAPETTQAPAGPAAKAPAATEPAPAGAEASSAPAATSGPAEAPAASMPTPLTPATPTEPASGTVTAPLAPPPTL
PRSDAGAMAAPATAVDATRPAVVSVDASSVPAVPAAEVASKRAVGNAAGSALSVRFSGASWYEIKDKSGKTLVSGLARDG
DARDVNGTPPFKVVFGNAEAVESLTVSGAPVDIRKYARNRVARATLP

Sequences:

>Translated_367_residues
MTDRDAANTGDLAPGGSPAEPSAVSHDRDDALRQIAGRLRAGRESQRLTIEDLATRLKVAPAKLLAVESGDVSALPDMTF
AKGLIRTYARVLQVDVDDQLARLNVRVQVANIGLRPEGGLGKTFSDKPSFAARRTGSRWLIGLLVAVVVIGGALAGMDRL
KQWLASHAPETTQAPAGPAAKAPAATEPAPAGAEASSAPAATSGPAEAPAASMPTPLTPATPTEPASGTVTAPLAPPPTL
PRSDAGAMAAPATAVDATRPAVVSVDASSVPAVPAAEVASKRAVGNAAGSALSVRFSGASWYEIKDKSGKTLVSGLARDG
DARDVNGTPPFKVVFGNAEAVESLTVSGAPVDIRKYARNRVARATLP
>Mature_366_residues
TDRDAANTGDLAPGGSPAEPSAVSHDRDDALRQIAGRLRAGRESQRLTIEDLATRLKVAPAKLLAVESGDVSALPDMTFA
KGLIRTYARVLQVDVDDQLARLNVRVQVANIGLRPEGGLGKTFSDKPSFAARRTGSRWLIGLLVAVVVIGGALAGMDRLK
QWLASHAPETTQAPAGPAAKAPAATEPAPAGAEASSAPAATSGPAEAPAASMPTPLTPATPTEPASGTVTAPLAPPPTLP
RSDAGAMAAPATAVDATRPAVVSVDASSVPAVPAAEVASKRAVGNAAGSALSVRFSGASWYEIKDKSGKTLVSGLARDGD
ARDVNGTPPFKVVFGNAEAVESLTVSGAPVDIRKYARNRVARATLP

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=350, Percent_Identity=28.2857142857143, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 37254; Mature: 37123

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRDAANTGDLAPGGSPAEPSAVSHDRDDALRQIAGRLRAGRESQRLTIEDLATRLKVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHCC
PAKLLAVESGDVSALPDMTFAKGLIRTYARVLQVDVDDQLARLNVRVQVANIGLRPEGGL
CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEEEEEEEEEEECCCCCCCC
GKTFSDKPSFAARRTGSRWLIGLLVAVVVIGGALAGMDRLKQWLASHAPETTQAPAGPAA
CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
KAPAATEPAPAGAEASSAPAATSGPAEAPAASMPTPLTPATPTEPASGTVTAPLAPPPTL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
PRSDAGAMAAPATAVDATRPAVVSVDASSVPAVPAAEVASKRAVGNAAGSALSVRFSGAS
CCCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCE
WYEIKDKSGKTLVSGLARDGDARDVNGTPPFKVVFGNAEAVESLTVSGAPVDIRKYARNR
EEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHEECCCCCHHHHHHHHHH
VARATLP
HHHCCCC
>Mature Secondary Structure 
TDRDAANTGDLAPGGSPAEPSAVSHDRDDALRQIAGRLRAGRESQRLTIEDLATRLKVA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHCC
PAKLLAVESGDVSALPDMTFAKGLIRTYARVLQVDVDDQLARLNVRVQVANIGLRPEGGL
CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEEEEEEEEEEECCCCCCCC
GKTFSDKPSFAARRTGSRWLIGLLVAVVVIGGALAGMDRLKQWLASHAPETTQAPAGPAA
CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
KAPAATEPAPAGAEASSAPAATSGPAEAPAASMPTPLTPATPTEPASGTVTAPLAPPPTL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
PRSDAGAMAAPATAVDATRPAVVSVDASSVPAVPAAEVASKRAVGNAAGSALSVRFSGAS
CCCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCE
WYEIKDKSGKTLVSGLARDGDARDVNGTPPFKVVFGNAEAVESLTVSGAPVDIRKYARNR
EEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHEECCCCCHHHHHHHHHH
VARATLP
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA