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The map label for this gene is pilF

Identifier: 17545932

GI number: 17545932

Start: 1281792

End: 1282583

Strand: Direct

Name: pilF

Synonym: RSc1213

Alternate gene names: NA

Gene position: 1281792-1282583 (Clockwise)

Preceding gene: 17545931

Following gene: 17545933

Centisome position: 34.49

GC content: 66.79

Gene sequence:

>792_bases
ATGAAGCGTTGGTCGACTGCTGTCAGTCTGGTTTTCACACTGGCCGCCGCCGGGTGCGCACTGCCGCCGCCACCGGCCCA
GACGCAGGACGTCAAGACGCTCTCCGATCAGACCGATATCAGCCGGCGCGCCGCGATCCGGCTGCAGTTGGCGACGCAGT
ACCTGGAGGCCGGGCAGGCCGCCACGGCGCTCGACGAGGTCAAGAACGCCATTGCGATCGACCCGTCCGTGCCGGGGGCC
TACCATATCCGCGCGCTGGCTTATATGAGCCTTGGGCAGCACGAACTGGCCGACGACAGTTTCCGGCGCGCCCTGTCCAT
GCAACCGAACGATGGCGACCTGCTGAACAACTACGGCTGGTTCCTGTGCGCGCAGGGCGGCAAGCCCGATCAGGGTATGG
CGATGCTGCGCCAGGCCATCGAGGCGCCCGCCGTCGGCAGTCCCTCCAAGCCGTGGACCAACCTCGGCGTCTGCCAGATG
CGCCAGGGCGATTTGGATGGCGCCGAGAAGAGCCTGACGCGCGCGACCTATATCGATGCGAACAATCCGCTGACCAATCT
GACGCTGGCGCAGCTCCACTACAAGCGCCGCGACTACGCGCGCGCCATGTCGTTCATCGAACGCGTCAACGGCCGCGGCA
ATCCGACGGCCGAGAGCCTGTGGCTGGGCGCTCGCATCGCGCGCCGCCTGGGCGATGTTTCGCAGCAGAATGCGTGGAGC
GCGCAGCTGCAGCGCCGTTTCCCCAATGCGCCCGAAGAGGCGGCTTTCGAGAGAGGAGCGTGGGATGACTGA

Upstream 100 bases:

>100_bases
AGGTCAAGGATCGTACGCGCCTGGCCGAGCGCGGTAAATTCGGCAAGACTGTTCCGATCCAGGTGATCGGGGCCGATTCC
ACTCACCGCATGGGTTCCGC

Downstream 100 bases:

>100_bases
CCGCGATGCGGCGAACACCGGCGATCTTGCGCCAGGGGGCTCGCCTGCCGAGCCTTCCGCGGTGTCGCACGACCGTGATG
ATGCGTTGCGCCAGATCGCC

Product: type 4 fimbrial biogenesis protein

Products: NA

Alternate protein names: Type IV Pilus Biogenesis Protein PilF; Fimbrial Biogenesis Protein; Fimbrial Biogenesis And Twitching Motility Protein; TPR Repeat-Containing Protein; Type 4 Fimbrial Biogenesis Protein; Type IV Pilus Assembly Protein PilF; Type 4 Fimbrial Biogenesis Protein PilF; Tfp Pilus Assembly Protein PilF; Pilus Assembly Protein; PilF Type IV Pilus Assembly Protein; Type IV Pili Biogenesis Protein PilF; TPR Repeat-Containing Pilus Assembly Protein PilF; Type Iv Pilus Biogenesis/Stability Protein Pilw; Type IV Fimbrial Biogenesis Protein; Tpr Repeat Protein; LysM Domain-Containing Protein; Protein Involved In Fimbrial Biogenesis; Type 4 Pilus Biogenesis Protein; TPR Domain-Containing Protein; Type IV Pilus Biogenesis Protein Pilf; Lipoprotein

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKRWSTAVSLVFTLAAAGCALPPPPAQTQDVKTLSDQTDISRRAAIRLQLATQYLEAGQAATALDEVKNAIAIDPSVPGA
YHIRALAYMSLGQHELADDSFRRALSMQPNDGDLLNNYGWFLCAQGGKPDQGMAMLRQAIEAPAVGSPSKPWTNLGVCQM
RQGDLDGAEKSLTRATYIDANNPLTNLTLAQLHYKRRDYARAMSFIERVNGRGNPTAESLWLGARIARRLGDVSQQNAWS
AQLQRRFPNAPEEAAFERGAWDD

Sequences:

>Translated_263_residues
MKRWSTAVSLVFTLAAAGCALPPPPAQTQDVKTLSDQTDISRRAAIRLQLATQYLEAGQAATALDEVKNAIAIDPSVPGA
YHIRALAYMSLGQHELADDSFRRALSMQPNDGDLLNNYGWFLCAQGGKPDQGMAMLRQAIEAPAVGSPSKPWTNLGVCQM
RQGDLDGAEKSLTRATYIDANNPLTNLTLAQLHYKRRDYARAMSFIERVNGRGNPTAESLWLGARIARRLGDVSQQNAWS
AQLQRRFPNAPEEAAFERGAWDD
>Mature_263_residues
MKRWSTAVSLVFTLAAAGCALPPPPAQTQDVKTLSDQTDISRRAAIRLQLATQYLEAGQAATALDEVKNAIAIDPSVPGA
YHIRALAYMSLGQHELADDSFRRALSMQPNDGDLLNNYGWFLCAQGGKPDQGMAMLRQAIEAPAVGSPSKPWTNLGVCQM
RQGDLDGAEKSLTRATYIDANNPLTNLTLAQLHYKRRDYARAMSFIERVNGRGNPTAESLWLGARIARRLGDVSQQNAWS
AQLQRRFPNAPEEAAFERGAWDD

Specific function: Unknown

COG id: COG3063

COG function: function code NU; Tfp pilus assembly protein PilF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28814; Mature: 28814

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRWSTAVSLVFTLAAAGCALPPPPAQTQDVKTLSDQTDISRRAAIRLQLATQYLEAGQA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
ATALDEVKNAIAIDPSVPGAYHIRALAYMSLGQHELADDSFRRALSMQPNDGDLLNNYGW
HHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCCCCHHCCCCE
FLCAQGGKPDQGMAMLRQAIEAPAVGSPSKPWTNLGVCQMRQGDLDGAEKSLTRATYIDA
EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHEEECC
NNPLTNLTLAQLHYKRRDYARAMSFIERVNGRGNPTAESLWLGARIARRLGDVSQQNAWS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH
AQLQRRFPNAPEEAAFERGAWDD
HHHHHHCCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MKRWSTAVSLVFTLAAAGCALPPPPAQTQDVKTLSDQTDISRRAAIRLQLATQYLEAGQA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
ATALDEVKNAIAIDPSVPGAYHIRALAYMSLGQHELADDSFRRALSMQPNDGDLLNNYGW
HHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCCCCHHCCCCE
FLCAQGGKPDQGMAMLRQAIEAPAVGSPSKPWTNLGVCQMRQGDLDGAEKSLTRATYIDA
EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHEEECC
NNPLTNLTLAQLHYKRRDYARAMSFIERVNGRGNPTAESLWLGARIARRLGDVSQQNAWS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH
AQLQRRFPNAPEEAAFERGAWDD
HHHHHHCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA