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The map label for this gene is ygeR [C]

Identifier: 17545925

GI number: 17545925

Start: 1274662

End: 1275468

Strand: Direct

Name: ygeR [C]

Synonym: RSc1206

Alternate gene names: 17545925

Gene position: 1274662-1275468 (Clockwise)

Preceding gene: 17545924

Following gene: 17545926

Centisome position: 34.3

GC content: 66.17

Gene sequence:

>807_bases
ATGAACCCTCCAAGCCCCGCACGCGCCGGCCGGCTCGCTGTGGCGATGGTGTCGGCCGCACTGCTGGCGGCTTGCGCATC
CTCCGGCAACCAGGCGCCCGTCCTCGATCGCACGTCGCGTGCGGGCAGTGCGCCCGCCGCGCCGCTGGAACCGCCTCCGC
CCGGCTACTATCGGGTCAAGCGTGGCGATACGCTCTACAGCATTGCGCTACGCAACGGCCAGGCGCCGCGCGATCTCGTG
ACGTGGAACAACATCCCCAACCCGAACCAGATCGAAGTCGACCAACTGATCCGCGTGGTGCCGCCGAATGCGGACGCCAG
CGCGACCGGCGCCGTCGCGACGCCGGTCCGCCCGCCCAATACCACGACGCAGCCGATCGATGCCGCGCCGGCCGCGACGC
CGCCCGTGGTCTCGTCCGGCGCTTCTGCCGGGGCAACGGACGGCGCAATCGCACTGGCTTGGCCCGCGCATGGCCAGGTG
ATCGGCCGCTTCGACGACAAGGCCAACAAGGGCATCGACATCGGCGGCAAGCGGGGCGACGCGGTCACGGCTGCCGATGA
CGGAAAAGTGATCCACGTTGGACCCTTGCGTGGGTACGGGAATCTTGTCATCATCAAGCACAACGATACGTTCCTGACCG
CCTACGGCAACAACGATAAGGTTCTGGTCACCGAGCAATCCACGGTCAAGAAAGGGCAGAAGATCGCCGAAATGGGCAGT
ACCGATGCGGACCGCGTGAAACTTCACTTTGAAGTGCGCCGCAACGGTAAGCCTGTCGATCCGATGCGTTTCCTTCCGCC
GCAATAG

Upstream 100 bases:

>100_bases
CGCCGCGGCCGCTTCCAGTTTCACAGTACCGCGCTTGAAGGCGTTTTCTTTGTCCCGTTAAAATCAGGAACTGTTTAGCA
TGTTCACCCTCCGGAGCTCC

Downstream 100 bases:

>100_bases
AGGAATGCATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAAC
GCCCCGAACGGGCGTAGCGG

Product: lipoprotein NLPD/LppB-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MNPPSPARAGRLAVAMVSAALLAACASSGNQAPVLDRTSRAGSAPAAPLEPPPPGYYRVKRGDTLYSIALRNGQAPRDLV
TWNNIPNPNQIEVDQLIRVVPPNADASATGAVATPVRPPNTTTQPIDAAPAATPPVVSSGASAGATDGAIALAWPAHGQV
IGRFDDKANKGIDIGGKRGDAVTAADDGKVIHVGPLRGYGNLVIIKHNDTFLTAYGNNDKVLVTEQSTVKKGQKIAEMGS
TDADRVKLHFEVRRNGKPVDPMRFLPPQ

Sequences:

>Translated_268_residues
MNPPSPARAGRLAVAMVSAALLAACASSGNQAPVLDRTSRAGSAPAAPLEPPPPGYYRVKRGDTLYSIALRNGQAPRDLV
TWNNIPNPNQIEVDQLIRVVPPNADASATGAVATPVRPPNTTTQPIDAAPAATPPVVSSGASAGATDGAIALAWPAHGQV
IGRFDDKANKGIDIGGKRGDAVTAADDGKVIHVGPLRGYGNLVIIKHNDTFLTAYGNNDKVLVTEQSTVKKGQKIAEMGS
TDADRVKLHFEVRRNGKPVDPMRFLPPQ
>Mature_268_residues
MNPPSPARAGRLAVAMVSAALLAACASSGNQAPVLDRTSRAGSAPAAPLEPPPPGYYRVKRGDTLYSIALRNGQAPRDLV
TWNNIPNPNQIEVDQLIRVVPPNADASATGAVATPVRPPNTTTQPIDAAPAATPPVVSSGASAGATDGAIALAWPAHGQV
IGRFDDKANKGIDIGGKRGDAVTAADDGKVIHVGPLRGYGNLVIIKHNDTFLTAYGNNDKVLVTEQSTVKKGQKIAEMGS
TDADRVKLHFEVRRNGKPVDPMRFLPPQ

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=263, Percent_Identity=38.4030418250951, Blast_Score=160, Evalue=6e-41,
Organism=Escherichia coli, GI1789099, Length=258, Percent_Identity=37.5968992248062, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI87082297, Length=118, Percent_Identity=37.2881355932203, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 27919; Mature: 27919

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS00782 TFIIB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPSPARAGRLAVAMVSAALLAACASSGNQAPVLDRTSRAGSAPAAPLEPPPPGYYRVK
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEE
RGDTLYSIALRNGQAPRDLVTWNNIPNPNQIEVDQLIRVVPPNADASATGAVATPVRPPN
CCCEEEEEEECCCCCCCEEEEECCCCCCCEEEHHHHHEECCCCCCCCCCCCEECCCCCCC
TTTQPIDAAPAATPPVVSSGASAGATDGAIALAWPAHGQVIGRFDDKANKGIDIGGKRGD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
AVTAADDGKVIHVGPLRGYGNLVIIKHNDTFLTAYGNNDKVLVTEQSTVKKGQKIAEMGS
EEEECCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCEEEEECHHHHHHHHHHHHHCC
TDADRVKLHFEVRRNGKPVDPMRFLPPQ
CCCCEEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MNPPSPARAGRLAVAMVSAALLAACASSGNQAPVLDRTSRAGSAPAAPLEPPPPGYYRVK
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEE
RGDTLYSIALRNGQAPRDLVTWNNIPNPNQIEVDQLIRVVPPNADASATGAVATPVRPPN
CCCEEEEEEECCCCCCCEEEEECCCCCCCEEEHHHHHEECCCCCCCCCCCCEECCCCCCC
TTTQPIDAAPAATPPVVSSGASAGATDGAIALAWPAHGQVIGRFDDKANKGIDIGGKRGD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
AVTAADDGKVIHVGPLRGYGNLVIIKHNDTFLTAYGNNDKVLVTEQSTVKKGQKIAEMGS
EEEECCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCEEEEECHHHHHHHHHHHHHCC
TDADRVKLHFEVRRNGKPVDPMRFLPPQ
CCCCEEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]