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The map label for this gene is ydhO [H]

Identifier: 17545896

GI number: 17545896

Start: 1238189

End: 1238857

Strand: Direct

Name: ydhO [H]

Synonym: RSc1177

Alternate gene names: 17545896

Gene position: 1238189-1238857 (Clockwise)

Preceding gene: 17545895

Following gene: 17545898

Centisome position: 33.32

GC content: 63.98

Gene sequence:

>669_bases
ATGCAGCATTTCGTACTTCATTCCATGGCGCGCCTGGCGGTGGGGGTTGTGATCGGCTGCGGCGTGCTCGTCTCGAATGG
AGTGCGCGCCGACACCGTGTTCAAGGACACGGAAGTCCGCGCCGATGCCAAGCCGGAAGCCAAGCCCGGGATCTTTTCCT
CCATGGTTGGCGCCACCTCCGATGTGGTGAGCCGGACCGGCGACGTCGTCATGAACGCGCTGGGCATGATCGGCTTGCGC
TACCGGTTCGGCGGCAATACGCCTGAATCGGGCCTCGACTGCAGCGGCTTTGTCCGCTACGTCTTCCACGACACCTTCGG
CTTCCTGCTGCCGCGTCGCGCGGTGGAGATGAGCCGCGTCGGCACCAGCGTTGACATGAAGGATCTGCGCCCCGGCGATC
TGGTGTTCTTCAACACCATGCACCGCACGTTCTCGCATGTGGCCATCTACGTCGGCGACAACAAAATGGTGCATGCGCCC
TCGACCGGCAGCAAGATCCGCGTCGATGACATGACCGCGTCGTACTGGGTGTCGCGCTACAACGGCGCGCGCCGCATCGA
CTGGCAGGGCAACGGCCAGATCAAGGAAGGCGCCGAGAATTTCGTCGAGCAGCTGCAGCGGATCGACCCGAACGCCGCCG
GCAAGTCGCTCTCGATGTACGGCGGCTGA

Upstream 100 bases:

>100_bases
TTTTTATCATCCTGCGAGATTGTTTGAGCAGGATTCGGAAAGGTCGCATTCCGTTCGTATCGGTTCGGTTGACTCTCCGC
CCTTCCCAACAGGAGAACCA

Downstream 100 bases:

>100_bases
TCCGCTCGATACCCGGACCCCAAGAAAGAAGACCGCCGCGGCGGTCTTTTTTGTTGCCTGTCTCCGGCGCCGGTCAATGC
GGCGGCAGCGGCGTGGCCTG

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQHFVLHSMARLAVGVVIGCGVLVSNGVRADTVFKDTEVRADAKPEAKPGIFSSMVGATSDVVSRTGDVVMNALGMIGLR
YRFGGNTPESGLDCSGFVRYVFHDTFGFLLPRRAVEMSRVGTSVDMKDLRPGDLVFFNTMHRTFSHVAIYVGDNKMVHAP
STGSKIRVDDMTASYWVSRYNGARRIDWQGNGQIKEGAENFVEQLQRIDPNAAGKSLSMYGG

Sequences:

>Translated_222_residues
MQHFVLHSMARLAVGVVIGCGVLVSNGVRADTVFKDTEVRADAKPEAKPGIFSSMVGATSDVVSRTGDVVMNALGMIGLR
YRFGGNTPESGLDCSGFVRYVFHDTFGFLLPRRAVEMSRVGTSVDMKDLRPGDLVFFNTMHRTFSHVAIYVGDNKMVHAP
STGSKIRVDDMTASYWVSRYNGARRIDWQGNGQIKEGAENFVEQLQRIDPNAAGKSLSMYGG
>Mature_222_residues
MQHFVLHSMARLAVGVVIGCGVLVSNGVRADTVFKDTEVRADAKPEAKPGIFSSMVGATSDVVSRTGDVVMNALGMIGLR
YRFGGNTPESGLDCSGFVRYVFHDTFGFLLPRRAVEMSRVGTSVDMKDLRPGDLVFFNTMHRTFSHVAIYVGDNKMVHAP
STGSKIRVDDMTASYWVSRYNGARRIDWQGNGQIKEGAENFVEQLQRIDPNAAGKSLSMYGG

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=137, Percent_Identity=39.4160583941606, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788501, Length=109, Percent_Identity=48.6238532110092, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1786421, Length=132, Percent_Identity=37.1212121212121, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=40.9090909090909, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 24263; Mature: 24263

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHFVLHSMARLAVGVVIGCGVLVSNGVRADTVFKDTEVRADAKPEAKPGIFSSMVGATS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCHH
DVVSRTGDVVMNALGMIGLRYRFGGNTPESGLDCSGFVRYVFHDTFGFLLPRRAVEMSRV
HHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTSVDMKDLRPGDLVFFNTMHRTFSHVAIYVGDNKMVHAPSTGSKIRVDDMTASYWVSRY
CCCCCHHHCCCCCEEEEHHHHHHHHEEEEEECCCEEEECCCCCCEEEEECCHHHHHHHHC
NGARRIDWQGNGQIKEGAENFVEQLQRIDPNAAGKSLSMYGG
CCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCC
>Mature Secondary Structure
MQHFVLHSMARLAVGVVIGCGVLVSNGVRADTVFKDTEVRADAKPEAKPGIFSSMVGATS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCHH
DVVSRTGDVVMNALGMIGLRYRFGGNTPESGLDCSGFVRYVFHDTFGFLLPRRAVEMSRV
HHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTSVDMKDLRPGDLVFFNTMHRTFSHVAIYVGDNKMVHAPSTGSKIRVDDMTASYWVSRY
CCCCCHHHCCCCCEEEEHHHHHHHHEEEEEECCCEEEECCCCCCEEEEECCHHHHHHHHC
NGARRIDWQGNGQIKEGAENFVEQLQRIDPNAAGKSLSMYGG
CCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]