| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is gltX [H]
Identifier: 17545898
GI number: 17545898
Start: 1239959
End: 1241461
Strand: Direct
Name: gltX [H]
Synonym: RSc1179
Alternate gene names: 17545898
Gene position: 1239959-1241461 (Clockwise)
Preceding gene: 17545896
Following gene: 17545908
Centisome position: 33.36
GC content: 65.93
Gene sequence:
>1503_bases GTGCCAAAGTTCGGCGGCGGACCGGTCGGGCGCACAGGATGCGGTTGCTATAATTTCCGTTTTGACAGAGGCCGCCTTCG CGGCCTTGTCCGTTCGGCCATTCCTATGACTCAGCGCGTCCGCACCCGTTTCGCTCCCAGCCCCACCGGTTTCATCCACC TCGGCAACATCCGTTCGGCCCTGTATCCGTGGGCGTTCGCCCGCAAGATGAAGGGCGATTTCATCCTGCGCATCGAAGAT ACCGACGTGGAGCGCTCGACCCAGGAGGCCGTCGATGTGATCCTGGAAGCGATGGATTGGCTGGGCCTGGATATCGACGA AGGGCCGTTCTACCAGATGCAGCGCATGGACCGCTATCGCGAGGTCATCGCACAGATGGTCGCGCAAGACCTGGCCTACC CGTGCTACATGAGCACCGAGGAACTCGACGCCCTGCGCGAAGCCCAGCGCGTGCGCGGCGAGAAGCCCCGGTACGACGGC ACCTGGCGTCCCGAGCCAGGCAAAGTCCTGCCGACGCCGCCGGCCGGCGTGCAGCCGGTGATCCGCTTCAAGAACCCGAT CGGCGGCAGCGTGGTGTGGGACGATGCGGTCAAGGGCCGCATCGAGATCTCCAACGACGAGCTCGACGATCTCGTCATCG CGCGTCCGGATGGCACGCCCACCTACAACTTCTGCGTGGTGGTCGACGATATGGACATGCGTATCACCCATGTGATCCGC GGCGACGATCACGTCAACAATACGCCGCGCCAGATCAATATCCTGCGCGCGCTGGGCGGCACGCCGCCCATCTATGCCCA CCTGCCGACGGTGCTGAACGAGCAGGGCGAGAAGATGAGCAAGCGGCACGGCGCCATGAGCGTGACCGGCTACCGCGATG CGGGCTACCTGCCCGAAGCCGTCGTCAACTACCTGGCCCGCTTGGGCTGGGCGCACGGCGACGCGGAAATCTTCTCGCGC GAGCAGTTCGTCGAGTGGTTCGACCTGGAGCACCTGGGCAAGTCGCCGGCGCAGTACAACCCCGAGAAGCTCGCCTGGCT GAACAACCACTACATCAAGCAGGCCGACAACGCGCGGCTGGCAGAGCTGGTGAAGCCGTTCATCGAAGCGCTGGGCGGCC GCGTCGAGGGCGGTCCGCAGCTGGCCGACGTGATGGCCTTGGTGAAGGATCGCGCCAACACGCTGCAGGAAGTCGCGCAG ACGGCGCTGCTGTTCTATCGCACCGAGATCTCGGTGGCGCCGGAGCTGGCTGCGCAGCATCTCACCGATGAGGTGCGCCC GGGCATCATGGCCCTGGCCGACAAGCTGGGGACGTTGCCCGAGTGGAAGCGCGAGGCCATCGGCGCGGCCTTCAAGGAGG TGTTGGGTGCCCACGGCTGGAAGATGCCGAAGCTGGCAATGCCGGTGCGGCTGCTGGTGGCCGGCCAGTTGCAGACGCCG TCGATCGATGCGGTGCTGGAGCTGTTCGGCCGCGAGGTCGTGCTGCGCCGCCTGGCCGGGTGA
Upstream 100 bases:
>100_bases CCGGCGGCGCCCAGGAAGAGACGGCGTTGCATGGACGGTTGGGGCAGTTCTGGGTGGGACGCGCGGAGCCATCATGGGCG GACGCGGGCCGGTCGCCATT
Downstream 100 bases:
>100_bases TCCGGGCGGCCTGAAAAAATTTGCGAAAGGGTATTGCCAGCCGCTGAACACTTCCCCTATACTCTTGTTTTCGCTGAAAC ACGAAGCGAAAATGCAGTAA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 500; Mature: 499
Protein sequence:
>500_residues MPKFGGGPVGRTGCGCYNFRFDRGRLRGLVRSAIPMTQRVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGDFILRIED TDVERSTQEAVDVILEAMDWLGLDIDEGPFYQMQRMDRYREVIAQMVAQDLAYPCYMSTEELDALREAQRVRGEKPRYDG TWRPEPGKVLPTPPAGVQPVIRFKNPIGGSVVWDDAVKGRIEISNDELDDLVIARPDGTPTYNFCVVVDDMDMRITHVIR GDDHVNNTPRQINILRALGGTPPIYAHLPTVLNEQGEKMSKRHGAMSVTGYRDAGYLPEAVVNYLARLGWAHGDAEIFSR EQFVEWFDLEHLGKSPAQYNPEKLAWLNNHYIKQADNARLAELVKPFIEALGGRVEGGPQLADVMALVKDRANTLQEVAQ TALLFYRTEISVAPELAAQHLTDEVRPGIMALADKLGTLPEWKREAIGAAFKEVLGAHGWKMPKLAMPVRLLVAGQLQTP SIDAVLELFGREVVLRRLAG
Sequences:
>Translated_500_residues MPKFGGGPVGRTGCGCYNFRFDRGRLRGLVRSAIPMTQRVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGDFILRIED TDVERSTQEAVDVILEAMDWLGLDIDEGPFYQMQRMDRYREVIAQMVAQDLAYPCYMSTEELDALREAQRVRGEKPRYDG TWRPEPGKVLPTPPAGVQPVIRFKNPIGGSVVWDDAVKGRIEISNDELDDLVIARPDGTPTYNFCVVVDDMDMRITHVIR GDDHVNNTPRQINILRALGGTPPIYAHLPTVLNEQGEKMSKRHGAMSVTGYRDAGYLPEAVVNYLARLGWAHGDAEIFSR EQFVEWFDLEHLGKSPAQYNPEKLAWLNNHYIKQADNARLAELVKPFIEALGGRVEGGPQLADVMALVKDRANTLQEVAQ TALLFYRTEISVAPELAAQHLTDEVRPGIMALADKLGTLPEWKREAIGAAFKEVLGAHGWKMPKLAMPVRLLVAGQLQTP SIDAVLELFGREVVLRRLAG >Mature_499_residues PKFGGGPVGRTGCGCYNFRFDRGRLRGLVRSAIPMTQRVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGDFILRIEDT DVERSTQEAVDVILEAMDWLGLDIDEGPFYQMQRMDRYREVIAQMVAQDLAYPCYMSTEELDALREAQRVRGEKPRYDGT WRPEPGKVLPTPPAGVQPVIRFKNPIGGSVVWDDAVKGRIEISNDELDDLVIARPDGTPTYNFCVVVDDMDMRITHVIRG DDHVNNTPRQINILRALGGTPPIYAHLPTVLNEQGEKMSKRHGAMSVTGYRDAGYLPEAVVNYLARLGWAHGDAEIFSRE QFVEWFDLEHLGKSPAQYNPEKLAWLNNHYIKQADNARLAELVKPFIEALGGRVEGGPQLADVMALVKDRANTLQEVAQT ALLFYRTEISVAPELAAQHLTDEVRPGIMALADKLGTLPEWKREAIGAAFKEVLGAHGWKMPKLAMPVRLLVAGQLQTPS IDAVLELFGREVVLRRLAG
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=490, Percent_Identity=29.3877551020408, Blast_Score=197, Evalue=2e-50, Organism=Escherichia coli, GI1788743, Length=460, Percent_Identity=48.9130434782609, Blast_Score=468, Evalue=1e-133, Organism=Escherichia coli, GI226510925, Length=245, Percent_Identity=35.5102040816327, Blast_Score=131, Evalue=8e-32, Organism=Caenorhabditis elegans, GI71993394, Length=484, Percent_Identity=31.404958677686, Blast_Score=204, Evalue=1e-52, Organism=Saccharomyces cerevisiae, GI6324540, Length=484, Percent_Identity=29.7520661157025, Blast_Score=207, Evalue=3e-54, Organism=Saccharomyces cerevisiae, GI6321192, Length=237, Percent_Identity=27.0042194092827, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI24665321, Length=489, Percent_Identity=31.6973415132924, Blast_Score=228, Evalue=7e-60,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 55981; Mature: 55850
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKFGGGPVGRTGCGCYNFRFDRGRLRGLVRSAIPMTQRVRTRFAPSPTGFIHLGNIRSA CCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEECCHHHH LYPWAFARKMKGDFILRIEDTDVERSTQEAVDVILEAMDWLGLDIDEGPFYQMQRMDRYR HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH EVIAQMVAQDLAYPCYMSTEELDALREAQRVRGEKPRYDGTWRPEPGKVLPTPPAGVQPV HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH IRFKNPIGGSVVWDDAVKGRIEISNDELDDLVIARPDGTPTYNFCVVVDDMDMRITHVIR HEECCCCCCCEEECCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEC GDDHVNNTPRQINILRALGGTPPIYAHLPTVLNEQGEKMSKRHGAMSVTGYRDAGYLPEA CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHH VVNYLARLGWAHGDAEIFSREQFVEWFDLEHLGKSPAQYNPEKLAWLNNHYIKQADNARL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHCCCCHHH AELVKPFIEALGGRVEGGPQLADVMALVKDRANTLQEVAQTALLFYRTEISVAPELAAQH HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH LTDEVRPGIMALADKLGTLPEWKREAIGAAFKEVLGAHGWKMPKLAMPVRLLVAGQLQTP HHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCHHHEEECCCCCC SIDAVLELFGREVVLRRLAG CHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PKFGGGPVGRTGCGCYNFRFDRGRLRGLVRSAIPMTQRVRTRFAPSPTGFIHLGNIRSA CCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEECCHHHH LYPWAFARKMKGDFILRIEDTDVERSTQEAVDVILEAMDWLGLDIDEGPFYQMQRMDRYR HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH EVIAQMVAQDLAYPCYMSTEELDALREAQRVRGEKPRYDGTWRPEPGKVLPTPPAGVQPV HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH IRFKNPIGGSVVWDDAVKGRIEISNDELDDLVIARPDGTPTYNFCVVVDDMDMRITHVIR HEECCCCCCCEEECCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEC GDDHVNNTPRQINILRALGGTPPIYAHLPTVLNEQGEKMSKRHGAMSVTGYRDAGYLPEA CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHH VVNYLARLGWAHGDAEIFSREQFVEWFDLEHLGKSPAQYNPEKLAWLNNHYIKQADNARL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHCCCCHHH AELVKPFIEALGGRVEGGPQLADVMALVKDRANTLQEVAQTALLFYRTEISVAPELAAQH HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH LTDEVRPGIMALADKLGTLPEWKREAIGAAFKEVLGAHGWKMPKLAMPVRLLVAGQLQTP HHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCHHHEEECCCCCC SIDAVLELFGREVVLRRLAG CHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA