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The map label for this gene is rnfB [H]

Identifier: 17545725

GI number: 17545725

Start: 1056284

End: 1057090

Strand: Reverse

Name: rnfB [H]

Synonym: RSc1006

Alternate gene names: 17545725

Gene position: 1057090-1056284 (Counterclockwise)

Preceding gene: 17545727

Following gene: 17545724

Centisome position: 28.44

GC content: 73.48

Gene sequence:

>807_bases
GTGGTTTCCTTGGCCCCGTCCCTGGCCGACCGGCTCGAAGACCTGCTGCCGCAGACGCAATGCACCAAGTGCGGCTACAA
CGGCTGCCGCCCCTACGCCGAAGCCATGGCGCGCGGCGAAGCGCTGCCCAACCGCTGCCCGCCGGGCGGCGCGGAAGGCA
TCCGGCGCCTGTCCGAGGCGCTCGGGCGCACCGGCCCGCTGCTCGCGCTGGACTCTGCGCACGGCGTCGAGCAGCCGCGC
GCCCTGGCGCTCATCGATCCGGAGCGCTGCATCGGCTGCACGCTGTGCATCCAGGCCTGCCCTGTCGATGCCATCGTGGG
CGCGCCCAAGGCGATGCATGTGGTCCTGGAGGACTGGTGCACCGGCTGCGACCTCTGCGTCGCGCCCTGCCCGGTCGACT
GCATCGACATGGTGCCCGCGACCGGCGAGCGCACCGGCTGGAACGCCTGGAACCAGGCGCAGGCCGACGAGGCGCGCGAG
CGCTACACCTTCCGCAACGCACGCCTGGCCCGCGAGAAGGCCGAGAACGAAGCGCGCCTGGCCGAGAAGGCCGCCGCCAA
GCTGGCCGCCGTCAGCGCCGAGCAGCCCGCCGACGAGGCCGAGCGCGCCGCCCAGGCCCGCAAGCAGGCGATCATCCAGG
CCGCCATCGAGCGCGCCCGCCAGAAGCAGACCGAGATGGCCGCGCGCGGGCAAGGTCCGCGCAACGTCACCAACGTCCCG
GCCGATGTGCAGGCCCAGATCGACGAGGCCGAGGCGCGCCGCAAGCGCATCGCCGACCTCAGCAAGCCGCCCTCGGACAA
GCCCTGA

Upstream 100 bases:

>100_bases
GCCCGAACCGACTTCGCCGGCGGGCCGGTCGGGACATGCACGCCTTGCACGCGCGTCAAATCGGCGATAATGGCCTGCTA
TTCCAACGACTTGTCCCATC

Downstream 100 bases:

>100_bases
CCTCCCCTCTCCCCACGATCGTCCCTCGATGAACCCAGCCAAGCGCCGCGCCCTCTTCGAAACGCTCCGCGAACACAACC
CGACACCGACCACCGAGCTG

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MVSLAPSLADRLEDLLPQTQCTKCGYNGCRPYAEAMARGEALPNRCPPGGAEGIRRLSEALGRTGPLLALDSAHGVEQPR
ALALIDPERCIGCTLCIQACPVDAIVGAPKAMHVVLEDWCTGCDLCVAPCPVDCIDMVPATGERTGWNAWNQAQADEARE
RYTFRNARLAREKAENEARLAEKAAAKLAAVSAEQPADEAERAAQARKQAIIQAAIERARQKQTEMAARGQGPRNVTNVP
ADVQAQIDEAEARRKRIADLSKPPSDKP

Sequences:

>Translated_268_residues
MVSLAPSLADRLEDLLPQTQCTKCGYNGCRPYAEAMARGEALPNRCPPGGAEGIRRLSEALGRTGPLLALDSAHGVEQPR
ALALIDPERCIGCTLCIQACPVDAIVGAPKAMHVVLEDWCTGCDLCVAPCPVDCIDMVPATGERTGWNAWNQAQADEARE
RYTFRNARLAREKAENEARLAEKAAAKLAAVSAEQPADEAERAAQARKQAIIQAAIERARQKQTEMAARGQGPRNVTNVP
ADVQAQIDEAEARRKRIADLSKPPSDKP
>Mature_268_residues
MVSLAPSLADRLEDLLPQTQCTKCGYNGCRPYAEAMARGEALPNRCPPGGAEGIRRLSEALGRTGPLLALDSAHGVEQPR
ALALIDPERCIGCTLCIQACPVDAIVGAPKAMHVVLEDWCTGCDLCVAPCPVDCIDMVPATGERTGWNAWNQAQADEARE
RYTFRNARLAREKAENEARLAEKAAAKLAAVSAEQPADEAERAAQARKQAIIQAAIERARQKQTEMAARGQGPRNVTNVP
ADVQAQIDEAEARRKRIADLSKPPSDKP

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=145, Percent_Identity=48.2758620689655, Blast_Score=137, Evalue=8e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 28828; Mature: 28828

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLAPSLADRLEDLLPQTQCTKCGYNGCRPYAEAMARGEALPNRCPPGGAEGIRRLSEA
CCCCCHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
LGRTGPLLALDSAHGVEQPRALALIDPERCIGCTLCIQACPVDAIVGAPKAMHVVLEDWC
HCCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHC
TGCDLCVAPCPVDCIDMVPATGERTGWNAWNQAQADEARERYTFRNARLAREKAENEARL
CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEKAAAKLAAVSAEQPADEAERAAQARKQAIIQAAIERARQKQTEMAARGQGPRNVTNVP
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ADVQAQIDEAEARRKRIADLSKPPSDKP
CHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVSLAPSLADRLEDLLPQTQCTKCGYNGCRPYAEAMARGEALPNRCPPGGAEGIRRLSEA
CCCCCHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
LGRTGPLLALDSAHGVEQPRALALIDPERCIGCTLCIQACPVDAIVGAPKAMHVVLEDWC
HCCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHC
TGCDLCVAPCPVDCIDMVPATGERTGWNAWNQAQADEARERYTFRNARLAREKAENEARL
CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEKAAAKLAAVSAEQPADEAERAAQARKQAIIQAAIERARQKQTEMAARGQGPRNVTNVP
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ADVQAQIDEAEARRKRIADLSKPPSDKP
CHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA