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The map label for this gene is ybbK [C]

Identifier: 17545521

GI number: 17545521

Start: 849491

End: 850240

Strand: Reverse

Name: ybbK [C]

Synonym: RSc0802

Alternate gene names: 17545521

Gene position: 850240-849491 (Counterclockwise)

Preceding gene: 17545522

Following gene: 17545515

Centisome position: 22.88

GC content: 64.8

Gene sequence:

>750_bases
ATGTTCTATGGCTTCTTCAGCGCAGGCGGCTTCATCTTCCTGATCGTGCTGCTGGTGATCTCGTCGTTCCGCGTGCTGCG
CGAGTACGAGCGCGGCGTGGTGTTCCTGCTCGGCCGCTTCTGGCGCGTAAAAGGGCCGGGGCTGGTGCTGATCGTGCCGG
CCATCCAGCAGATGGTGCGGGTGGACCTGCGCACCATCGTCATGGACGTGCCGCCGCAAGACGTGATCTCGCACGACAAC
GTGTCGGTCAAGGTCAACGCGGTGGTGTACTTCCGCGTGGTCGATCCGGAGCGCGCCATCATCCAGGTCGCCAATTTCCT
GGAGGCGACCAGCCAACTGGCGCAGACCACGCTGCGCGCCATCCTCGGCAAGCACGAACTGGACGAGATGCTGGCCGAGC
GCGAAAAGCTCAACCTCGACATCCAGAAGGTGCTCGACATCCAGACCGACCCCTGGGGGATCAAGATCGCCAACGTGGAG
ATCAAGCACGTCGACCTGAACGAGTCGATGATCCGCGCGATCGCCCGGCAGGCCGAGGCCGAGCGCGAGCGGCGCGCCAA
GGTGATCCACGCCGAGGGCGAGCTGCAGGCCGCCGAGAAGCTGCTGGAAGCCGCGCGCATGCTGGCCCAGCAGCCCGAGG
CGATCCAGTTGCGCTACCTGCAGACGCTCACGCAGATCGCCGGCGACAAGAGCTCGACGATCGTGTTCCCATTGCCGATG
GACATGCTGGGCGCGGTCAAAAAGGCGTAG

Upstream 100 bases:

>100_bases
TCACGCGCGGTGACCGCGTGCGCGTCATTGCCCGCCACGGGCTGACGCTGATGGTCGAGCCTGTCGCACCTGCGGCGGCG
GCATCCTGAGGAGAATAAAA

Downstream 100 bases:

>100_bases
CGCGGACGCTCACTTGCCGCCGGTCGCGGCCCAGTCGATGGCCGCGTCGAACAGCTTGCGGCCGGCGGGCGTCAGGTTGG
GGAAGGTCTCGTTGTCGAGG

Product: stomatin-like transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MFYGFFSAGGFIFLIVLLVISSFRVLREYERGVVFLLGRFWRVKGPGLVLIVPAIQQMVRVDLRTIVMDVPPQDVISHDN
VSVKVNAVVYFRVVDPERAIIQVANFLEATSQLAQTTLRAILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVE
IKHVDLNESMIRAIARQAEAERERRAKVIHAEGELQAAEKLLEAARMLAQQPEAIQLRYLQTLTQIAGDKSSTIVFPLPM
DMLGAVKKA

Sequences:

>Translated_249_residues
MFYGFFSAGGFIFLIVLLVISSFRVLREYERGVVFLLGRFWRVKGPGLVLIVPAIQQMVRVDLRTIVMDVPPQDVISHDN
VSVKVNAVVYFRVVDPERAIIQVANFLEATSQLAQTTLRAILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVE
IKHVDLNESMIRAIARQAEAERERRAKVIHAEGELQAAEKLLEAARMLAQQPEAIQLRYLQTLTQIAGDKSSTIVFPLPM
DMLGAVKKA
>Mature_249_residues
MFYGFFSAGGFIFLIVLLVISSFRVLREYERGVVFLLGRFWRVKGPGLVLIVPAIQQMVRVDLRTIVMDVPPQDVISHDN
VSVKVNAVVYFRVVDPERAIIQVANFLEATSQLAQTTLRAILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVE
IKHVDLNESMIRAIARQAEAERERRAKVIHAEGELQAAEKLLEAARMLAQQPEAIQLRYLQTLTQIAGDKSSTIVFPLPM
DMLGAVKKA

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=244, Percent_Identity=47.1311475409836, Blast_Score=209, Evalue=2e-54,
Organism=Homo sapiens, GI21686995, Length=242, Percent_Identity=46.2809917355372, Blast_Score=206, Evalue=2e-53,
Organism=Homo sapiens, GI221316744, Length=242, Percent_Identity=46.2809917355372, Blast_Score=205, Evalue=2e-53,
Organism=Homo sapiens, GI7657615, Length=241, Percent_Identity=35.2697095435685, Blast_Score=146, Evalue=2e-35,
Organism=Homo sapiens, GI7305503, Length=185, Percent_Identity=37.2972972972973, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI20149563, Length=166, Percent_Identity=36.7469879518072, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI38016907, Length=60, Percent_Identity=60, Blast_Score=76, Evalue=2e-14,
Organism=Escherichia coli, GI1786697, Length=188, Percent_Identity=35.6382978723404, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1790616, Length=202, Percent_Identity=27.2277227722772, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17569493, Length=248, Percent_Identity=45.9677419354839, Blast_Score=221, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI193209764, Length=248, Percent_Identity=45.9677419354839, Blast_Score=220, Evalue=6e-58,
Organism=Caenorhabditis elegans, GI71987612, Length=235, Percent_Identity=48.0851063829787, Blast_Score=201, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI25153583, Length=235, Percent_Identity=48.0851063829787, Blast_Score=201, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI71987621, Length=235, Percent_Identity=48.0851063829787, Blast_Score=200, Evalue=5e-52,
Organism=Caenorhabditis elegans, GI17570459, Length=251, Percent_Identity=45.4183266932271, Blast_Score=197, Evalue=4e-51,
Organism=Caenorhabditis elegans, GI17569499, Length=251, Percent_Identity=44.2231075697211, Blast_Score=196, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI17569497, Length=248, Percent_Identity=40.7258064516129, Blast_Score=193, Evalue=6e-50,
Organism=Caenorhabditis elegans, GI193210507, Length=252, Percent_Identity=44.4444444444444, Blast_Score=189, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17570161, Length=252, Percent_Identity=44.4444444444444, Blast_Score=188, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI71989948, Length=221, Percent_Identity=47.5113122171946, Blast_Score=185, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI32566490, Length=239, Percent_Identity=45.1882845188285, Blast_Score=177, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI71989955, Length=178, Percent_Identity=47.1910112359551, Blast_Score=144, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI71989963, Length=116, Percent_Identity=47.4137931034483, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI32564147, Length=173, Percent_Identity=36.9942196531792, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17542664, Length=159, Percent_Identity=25.7861635220126, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45556022, Length=224, Percent_Identity=50.8928571428571, Blast_Score=217, Evalue=5e-57,
Organism=Drosophila melanogaster, GI18860517, Length=240, Percent_Identity=47.9166666666667, Blast_Score=206, Evalue=8e-54,
Organism=Drosophila melanogaster, GI62484448, Length=243, Percent_Identity=49.7942386831276, Blast_Score=199, Evalue=1e-51,
Organism=Drosophila melanogaster, GI281365664, Length=243, Percent_Identity=49.7942386831276, Blast_Score=199, Evalue=2e-51,
Organism=Drosophila melanogaster, GI24657857, Length=243, Percent_Identity=49.7942386831276, Blast_Score=198, Evalue=2e-51,
Organism=Drosophila melanogaster, GI62484274, Length=243, Percent_Identity=49.7942386831276, Blast_Score=198, Evalue=3e-51,
Organism=Drosophila melanogaster, GI28573263, Length=248, Percent_Identity=39.5161290322581, Blast_Score=182, Evalue=2e-46,
Organism=Drosophila melanogaster, GI21356845, Length=238, Percent_Identity=37.8151260504202, Blast_Score=181, Evalue=6e-46,
Organism=Drosophila melanogaster, GI281361631, Length=240, Percent_Identity=37.9166666666667, Blast_Score=177, Evalue=7e-45,
Organism=Drosophila melanogaster, GI281361633, Length=240, Percent_Identity=37.9166666666667, Blast_Score=177, Evalue=7e-45,
Organism=Drosophila melanogaster, GI281361635, Length=181, Percent_Identity=39.7790055248619, Blast_Score=142, Evalue=2e-34,
Organism=Drosophila melanogaster, GI45550506, Length=188, Percent_Identity=37.2340425531915, Blast_Score=122, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28071; Mature: 28071

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYGFFSAGGFIFLIVLLVISSFRVLREYERGVVFLLGRFWRVKGPGLVLIVPAIQQMVR
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHEECCCCEEEEHHHHHHHHH
VDLRTIVMDVPPQDVISHDNVSVKVNAVVYFRVVDPERAIIQVANFLEATSQLAQTTLRA
HHHHHHHCCCCCHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
ILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVEIKHVDLNESMIRAIARQAEA
HHCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHH
ERERRAKVIHAEGELQAAEKLLEAARMLAQQPEAIQLRYLQTLTQIAGDKSSTIVFPLPM
HHHHHHHEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCH
DMLGAVKKA
HHHHHHHCC
>Mature Secondary Structure
MFYGFFSAGGFIFLIVLLVISSFRVLREYERGVVFLLGRFWRVKGPGLVLIVPAIQQMVR
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHEECCCCEEEEHHHHHHHHH
VDLRTIVMDVPPQDVISHDNVSVKVNAVVYFRVVDPERAIIQVANFLEATSQLAQTTLRA
HHHHHHHCCCCCHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
ILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVEIKHVDLNESMIRAIARQAEA
HHCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHH
ERERRAKVIHAEGELQAAEKLLEAARMLAQQPEAIQLRYLQTLTQIAGDKSSTIVFPLPM
HHHHHHHEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCH
DMLGAVKKA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]