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The map label for this gene is yfdE [H]

Identifier: 17545515

GI number: 17545515

Start: 839905

End: 841167

Strand: Reverse

Name: yfdE [H]

Synonym: RSc0796

Alternate gene names: 17545515

Gene position: 841167-839905 (Counterclockwise)

Preceding gene: 17545521

Following gene: 17545514

Centisome position: 22.63

GC content: 71.1

Gene sequence:

>1263_bases
GTGTACAGTGCACGCGTCCCAACCATGCCGAAACGCTTGCCCATGGGCGCCCTGAGCCATCTCCGAGTCCTCGACCTGAC
CCGCGTGCTTGCCGGCCCGTGGTGCGCGCAGAACCTCGCCGACTTCGGCGCCGATGTCATCAAGGTGGAACGCCCCGGCG
CGGGCGACGACACCCGCGCGTGGGGGCCACCCTGGCTCAGGAACGCGGCCGGCAGCGACACCGCCGAGGCCGCCTACTAC
CTGGCCGCCAACCGCAACAAGCGCTCCATCACGGTCGACATCAGCACGCCCGAGGGCCAGGAGATCGTGCGCCGGCTCGC
CGCCCACAGCGACGTGGTGCTCGAGAACTACAAGGTCGGCCAGTTGAAGAAATACGGCCTGGACTATGACGCGCTCAAGG
CCGTCAGGCCGGACCTGGTCTACTGCTCGATCACCGGCTTCGGCCAGACCGGCCCCTACGCCGCGCGCGCCGGCTACGAC
TTCATCGTGCAGGGCATGGGCGGCTTCATGAGCCTGACCGGCGAGCGCGACGACCTGCCCGGCGGCGGCCCGCAGAAGGC
CGGCGTGGCCATCTCGGACCTGATGACGGGCATGTACGCCACCGTCGCCGTGCTGGCCGCGCTGGCGCACCGCGACCGCA
CCGGCGAGGGCCAGTACATCGACATGGCGCTGCTCGACGTGCAGGTCGCCATGCTGGCCAACATGAACACCAACTACCTG
GCCAGCGGCCAGGCCCCCAGGCGCTGGGGCAACGCGCACCCGAACATCGTGCCGTACCAGACCTTCCAGACCGCGGACGG
CTGGATCATCGTGGCGGTCGGCAACGACGGGCAGTTCCGCCGCTTTGTCGAGGCCGGCGCCAACCCCGAACTGGCCGACG
ACCCGCGCTTTGCCACCAACCCGCAGCGCGTGGCCAACCGCGACGTGCTGGTGCCGATCCTGGCCGACATGGTCCGGCGC
CTCGGCAAGGCCGAGTGGATCCGCCGGCTCGAAGCCGCCGGCGTGCCCTGCGGCCCGATCAACTCGCTCGACGAGGTGTT
CGACAACGAGCAGGTCAAGGCGCGCGGCCTGCGCGTCGACCTGCCCCACCCGAGCGCGGGCACCGTGCCGCTGGTCGGCA
GCCCTGTCAGGATGAGCGCGACACCGCCGCAGGCCGTCGCCCATCCGCCGCTGCTGGGCGAGCACACCGAGGCCGTGCTG
CGCGACGTGCTGGACCTGCCGCAGGCGCAGATCGCGGCGCTGCGCGCGCAGGGCGTCATCTAG

Upstream 100 bases:

>100_bases
CTCCCGGGCGTCTTGGATTAGTGCAAACCGTTGATTATACGGGGTTCGCACCGCGTTCGCGCCCATTCGTCGCAGGGGGC
TGGGGTGACGCGGAAGGCTG

Downstream 100 bases:

>100_bases
CCTTCCGATTCCCCACCGAGACGAGGTCACCATGTGGTCCGATGCGTTGCTGGCTTACCTGCATTACCTGTCGATCTTCA
CGCTGATCGTCTTCGTCACC

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MYSARVPTMPKRLPMGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDTRAWGPPWLRNAAGSDTAEAAYY
LAANRNKRSITVDISTPEGQEIVRRLAAHSDVVLENYKVGQLKKYGLDYDALKAVRPDLVYCSITGFGQTGPYAARAGYD
FIVQGMGGFMSLTGERDDLPGGGPQKAGVAISDLMTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAMLANMNTNYL
ASGQAPRRWGNAHPNIVPYQTFQTADGWIIVAVGNDGQFRRFVEAGANPELADDPRFATNPQRVANRDVLVPILADMVRR
LGKAEWIRRLEAAGVPCGPINSLDEVFDNEQVKARGLRVDLPHPSAGTVPLVGSPVRMSATPPQAVAHPPLLGEHTEAVL
RDVLDLPQAQIAALRAQGVI

Sequences:

>Translated_420_residues
MYSARVPTMPKRLPMGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDTRAWGPPWLRNAAGSDTAEAAYY
LAANRNKRSITVDISTPEGQEIVRRLAAHSDVVLENYKVGQLKKYGLDYDALKAVRPDLVYCSITGFGQTGPYAARAGYD
FIVQGMGGFMSLTGERDDLPGGGPQKAGVAISDLMTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAMLANMNTNYL
ASGQAPRRWGNAHPNIVPYQTFQTADGWIIVAVGNDGQFRRFVEAGANPELADDPRFATNPQRVANRDVLVPILADMVRR
LGKAEWIRRLEAAGVPCGPINSLDEVFDNEQVKARGLRVDLPHPSAGTVPLVGSPVRMSATPPQAVAHPPLLGEHTEAVL
RDVLDLPQAQIAALRAQGVI
>Mature_420_residues
MYSARVPTMPKRLPMGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDTRAWGPPWLRNAAGSDTAEAAYY
LAANRNKRSITVDISTPEGQEIVRRLAAHSDVVLENYKVGQLKKYGLDYDALKAVRPDLVYCSITGFGQTGPYAARAGYD
FIVQGMGGFMSLTGERDDLPGGGPQKAGVAISDLMTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAMLANMNTNYL
ASGQAPRRWGNAHPNIVPYQTFQTADGWIIVAVGNDGQFRRFVEAGANPELADDPRFATNPQRVANRDVLVPILADMVRR
LGKAEWIRRLEAAGVPCGPINSLDEVFDNEQVKARGLRVDLPHPSAGTVPLVGSPVRMSATPPQAVAHPPLLGEHTEAVL
RDVLDLPQAQIAALRAQGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=44.6650124069479, Blast_Score=363, Evalue=1e-100,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=41.958041958042, Blast_Score=349, Evalue=3e-96,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=38.6946386946387, Blast_Score=303, Evalue=2e-82,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=39.454094292804, Blast_Score=299, Evalue=4e-81,
Organism=Homo sapiens, GI266456254, Length=407, Percent_Identity=27.027027027027, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI42794625, Length=407, Percent_Identity=27.027027027027, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI266458397, Length=274, Percent_Identity=30.6569343065693, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=30.7692307692308, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458395, Length=163, Percent_Identity=33.1288343558282, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI42822893, Length=163, Percent_Identity=33.1288343558282, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI87082093, Length=388, Percent_Identity=32.4742268041237, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI1788717, Length=425, Percent_Identity=31.5294117647059, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1786222, Length=357, Percent_Identity=25.7703081232493, Blast_Score=89, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=364, Percent_Identity=25.2747252747253, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=344, Percent_Identity=25, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=46.8982630272953, Blast_Score=365, Evalue=1e-101,
Organism=Drosophila melanogaster, GI24585488, Length=343, Percent_Identity=26.2390670553936, Blast_Score=102, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45262; Mature: 45262

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSARVPTMPKRLPMGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDTRA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCCC
WGPPWLRNAAGSDTAEAAYYLAANRNKRSITVDISTPEGQEIVRRLAAHSDVVLENYKVG
CCCHHHHCCCCCCHHHEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCEEEECCCCC
QLKKYGLDYDALKAVRPDLVYCSITGFGQTGPYAARAGYDFIVQGMGGFMSLTGERDDLP
CHHHHCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHCCCHHHHHCCCCEEEECCCCCCCC
GGGPQKAGVAISDLMTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAMLANMNTNYL
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEE
ASGQAPRRWGNAHPNIVPYQTFQTADGWIIVAVGNDGQFRRFVEAGANPELADDPRFATN
ECCCCCHHCCCCCCCCCCCCEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCC
PQRVANRDVLVPILADMVRRLGKAEWIRRLEAAGVPCGPINSLDEVFDNEQVKARGLRVD
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEECCCCEEE
LPHPSAGTVPLVGSPVRMSATPPQAVAHPPLLGEHTEAVLRDVLDLPQAQIAALRAQGVI
CCCCCCCCEEECCCCEEECCCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MYSARVPTMPKRLPMGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDTRA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCCC
WGPPWLRNAAGSDTAEAAYYLAANRNKRSITVDISTPEGQEIVRRLAAHSDVVLENYKVG
CCCHHHHCCCCCCHHHEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCEEEECCCCC
QLKKYGLDYDALKAVRPDLVYCSITGFGQTGPYAARAGYDFIVQGMGGFMSLTGERDDLP
CHHHHCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHCCCHHHHHCCCCEEEECCCCCCCC
GGGPQKAGVAISDLMTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAMLANMNTNYL
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEE
ASGQAPRRWGNAHPNIVPYQTFQTADGWIIVAVGNDGQFRRFVEAGANPELADDPRFATN
ECCCCCHHCCCCCCCCCCCCEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCC
PQRVANRDVLVPILADMVRRLGKAEWIRRLEAAGVPCGPINSLDEVFDNEQVKARGLRVD
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEECCCCEEE
LPHPSAGTVPLVGSPVRMSATPPQAVAHPPLLGEHTEAVLRDVLDLPQAQIAALRAQGVI
CCCCCCCCEEECCCCEEECCCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]