BacMap

Definition	Ralstonia solanacearum GMI1000, complete genome.
Accession	NC_003295
Length	3,716,413

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The map label for this gene is yjkB [H]

Identifier: 17545468

GI number: 17545468

Start: 793899

End: 794591

Strand: Reverse

Name: yjkB [H]

Synonym: RSc0749

Alternate gene names: 17545468

Gene position: 794591-793899 (Counterclockwise)

Preceding gene: 17545470

Following gene: 17545467

Centisome position: 21.38

GC content: 74.17

Gene sequence:

>693_bases
ATGCTGACCGCCACCGCCATCCAGCGCCGGGACGCGCAGACCGGTGCACCGCTGCTGCACCCGGCCTCGCTCGCCGTCCA
CCCGGGCGACCGCATTGCGCTGACCGGGCCGTCCGGTGCCGGCAAGAGCGTGCTGCTGCGGGCGCTGGCGCTGCTCGACC
CGCTGGATGACGGTCATGTGACATGGCGGGGTGAAACGGTGTCCGCTGCCGGCGTCCCGGCGTTCCGGTGCGAGGTGGCC
TACGTGAGGCAGCGCCCCGCCCTGCTGCCCGGCTCGGTGGAAGACAACCTGCAATTGCCCTACCGCCTGCACGCCCGCAG
GACAGGCCCCGGCTTCGACCGCGACGCCGCCATCGCCCTGCTCGCGCGCGCCGACCGCGATGCGCGCTTCCTCGACAAGC
GCGCGACCGACCTGTCGGGCGGCGAAGCGCAGATCGCCGCGCTGGTGCGCACCCTGCAGACCGGGCCGGCCATCCTGCTG
CTGGACGAGCCGACCGCCGCGCTCGACCCCGCATCGGCCCGCGCCATCGAGGCGATGCTGCTGCACTGGTTCGCACAGGC
GCCCGAGCGCCGGGCTTGGGTCTGGATCACGCATGACCCGGCGCAGGCGACGCGGATCGCCCACCGCTACTGGCGCGTCG
CGGCCGGGTGCCTCGACACCCGGGCGCCTGTGCCGCAGCAGCCTGAAACCTGA

Upstream 100 bases:

>100_bases
CCCGCGCGTTTCCGATGAAGCATGCCCCGCGCGCTCATACGCACAATGCATCAATGCCTCGCATTGATGCGTTACTTTAG
ACAACACTTCACACCAGATC

Downstream 100 bases:

>100_bases
GGCCCGAACCATGAGCACACCCGCCCCCGAACAGATGCTCTCCGCCTGGCAGGTCGGCATTGCGGCCCTGCTGATCCTCG
TCAACGGCGCGCTGTCCATC

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MLTATAIQRRDAQTGAPLLHPASLAVHPGDRIALTGPSGAGKSVLLRALALLDPLDDGHVTWRGETVSAAGVPAFRCEVA
YVRQRPALLPGSVEDNLQLPYRLHARRTGPGFDRDAAIALLARADRDARFLDKRATDLSGGEAQIAALVRTLQTGPAILL
LDEPTAALDPASARAIEAMLLHWFAQAPERRAWVWITHDPAQATRIAHRYWRVAAGCLDTRAPVPQQPET

Sequences:

>Translated_230_residues
MLTATAIQRRDAQTGAPLLHPASLAVHPGDRIALTGPSGAGKSVLLRALALLDPLDDGHVTWRGETVSAAGVPAFRCEVA
YVRQRPALLPGSVEDNLQLPYRLHARRTGPGFDRDAAIALLARADRDARFLDKRATDLSGGEAQIAALVRTLQTGPAILL
LDEPTAALDPASARAIEAMLLHWFAQAPERRAWVWITHDPAQATRIAHRYWRVAAGCLDTRAPVPQQPET
>Mature_230_residues
MLTATAIQRRDAQTGAPLLHPASLAVHPGDRIALTGPSGAGKSVLLRALALLDPLDDGHVTWRGETVSAAGVPAFRCEVA
YVRQRPALLPGSVEDNLQLPYRLHARRTGPGFDRDAAIALLARADRDARFLDKRATDLSGGEAQIAALVRTLQTGPAILL
LDEPTAALDPASARAIEAMLLHWFAQAPERRAWVWITHDPAQATRIAHRYWRVAAGCLDTRAPVPQQPET

Specific function: Unknown

COG id: COG4619

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955963, Length=173, Percent_Identity=34.1040462427746, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI190343023, Length=167, Percent_Identity=32.3353293413174, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI9955968, Length=169, Percent_Identity=30.1775147928994, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI9955966, Length=169, Percent_Identity=30.1775147928994, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI45243524, Length=169, Percent_Identity=30.1775147928994, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI255708477, Length=195, Percent_Identity=28.2051282051282, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI42741659, Length=187, Percent_Identity=31.5508021390374, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI21536378, Length=197, Percent_Identity=28.4263959390863, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI157502203, Length=169, Percent_Identity=28.4023668639053, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI157502201, Length=169, Percent_Identity=28.4023668639053, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI148612844, Length=188, Percent_Identity=30.3191489361702, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI171184400, Length=170, Percent_Identity=30.5882352941176, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1786698, Length=184, Percent_Identity=34.7826086956522, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788761, Length=214, Percent_Identity=34.5794392523364, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790162, Length=198, Percent_Identity=29.2929292929293, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790467, Length=197, Percent_Identity=33.502538071066, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788225, Length=240, Percent_Identity=30, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786872, Length=192, Percent_Identity=31.25, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789891, Length=205, Percent_Identity=32.6829268292683, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789672, Length=195, Percent_Identity=31.2820512820513, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081834, Length=195, Percent_Identity=31.2820512820513, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786654, Length=183, Percent_Identity=32.2404371584699, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786398, Length=223, Percent_Identity=31.390134529148, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790544, Length=173, Percent_Identity=33.5260115606936, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787029, Length=207, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787089, Length=200, Percent_Identity=34, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787370, Length=204, Percent_Identity=28.4313725490196, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI2367384, Length=210, Percent_Identity=30.4761904761905, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786563, Length=212, Percent_Identity=27.8301886792453, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87082267, Length=204, Percent_Identity=30.8823529411765, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693107, Length=216, Percent_Identity=30.5555555555556, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787712, Length=190, Percent_Identity=31.0526315789474, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787105, Length=202, Percent_Identity=31.6831683168317, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081782, Length=194, Percent_Identity=31.9587628865979, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788450, Length=189, Percent_Identity=30.6878306878307, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789032, Length=210, Percent_Identity=30.952380952381, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790190, Length=202, Percent_Identity=27.2277227722772, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788506, Length=231, Percent_Identity=32.034632034632, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786253, Length=199, Percent_Identity=32.6633165829146, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI87081791, Length=189, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081709, Length=187, Percent_Identity=28.3422459893048, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787143, Length=168, Percent_Identity=30.3571428571429, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787500, Length=203, Percent_Identity=24.6305418719212, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787792, Length=198, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787112, Length=203, Percent_Identity=29.064039408867, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790534, Length=221, Percent_Identity=31.2217194570136, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=185, Percent_Identity=30.2702702702703, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI193211017, Length=188, Percent_Identity=32.9787234042553, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI193211015, Length=188, Percent_Identity=32.9787234042553, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71996809, Length=188, Percent_Identity=32.9787234042553, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17541710, Length=192, Percent_Identity=32.2916666666667, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17558664, Length=223, Percent_Identity=31.390134529148, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71984940, Length=183, Percent_Identity=30.0546448087432, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17567269, Length=201, Percent_Identity=30.8457711442786, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25146777, Length=188, Percent_Identity=30.8510638297872, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=189, Percent_Identity=31.2169312169312, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=171, Percent_Identity=30.9941520467836, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115535101, Length=172, Percent_Identity=31.3953488372093, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17565938, Length=192, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=178, Percent_Identity=29.7752808988764, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17569143, Length=186, Percent_Identity=29.0322580645161, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=192, Percent_Identity=29.6875, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=178, Percent_Identity=30.3370786516854, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=163, Percent_Identity=28.8343558282209, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24659289, Length=212, Percent_Identity=33.0188679245283, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI21357907, Length=174, Percent_Identity=32.7586206896552, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85726357, Length=165, Percent_Identity=29.6969696969697, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281363262, Length=180, Percent_Identity=27.2222222222222, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24653245, Length=180, Percent_Identity=27.2222222222222, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24823; Mature: 24823

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTATAIQRRDAQTGAPLLHPASLAVHPGDRIALTGPSGAGKSVLLRALALLDPLDDGHV
CCCCHHHHHHCCCCCCCEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEE
TWRGETVSAAGVPAFRCEVAYVRQRPALLPGSVEDNLQLPYRLHARRTGPGFDRDAAIAL
EEECCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH
LARADRDARFLDKRATDLSGGEAQIAALVRTLQTGPAILLLDEPTAALDPASARAIEAML
HHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
LHWFAQAPERRAWVWITHDPAQATRIAHRYWRVAAGCLDTRAPVPQQPET
HHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLTATAIQRRDAQTGAPLLHPASLAVHPGDRIALTGPSGAGKSVLLRALALLDPLDDGHV
CCCCHHHHHHCCCCCCCEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEE
TWRGETVSAAGVPAFRCEVAYVRQRPALLPGSVEDNLQLPYRLHARRTGPGFDRDAAIAL
EEECCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH
LARADRDARFLDKRATDLSGGEAQIAALVRTLQTGPAILLLDEPTAALDPASARAIEAML
HHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
LHWFAQAPERRAWVWITHDPAQATRIAHRYWRVAAGCLDTRAPVPQQPET
HHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]