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The map label for this gene is nusB [H]

Identifier: 17545430

GI number: 17545430

Start: 759544

End: 760029

Strand: Reverse

Name: nusB [H]

Synonym: RSc0711

Alternate gene names: 17545430

Gene position: 760029-759544 (Counterclockwise)

Preceding gene: 17545431

Following gene: 17545429

Centisome position: 20.45

GC content: 67.9

Gene sequence:

>486_bases
TTGCGCAAAGGCATCACCATGACGCAAGACAATTCCCCGGCCAAGCCCAAGGCGCCGCCCAAGAGCGCGCGCCGCCGTGC
CCGCGAACTGGCGCTGCAGGGCCTGTACCAATGGCTGCTCAACCGCAACGACCCGGGCGTGGTCGAGGCGCACCTGCATG
ACGCGCAGGGCTTCAACAAGGCCGACCGCGCCCACTTCGATGCGCTGCTGCACGGCGCCATCCGCGAAGAGGCGACGCTG
ACCGAGAGCTTCACGCCGTTCCTGGACCGCCCGGTCGCCGAGCTGTCGCCGGTCGAGCGCGCTGCCCTGCTGGTGGGCGC
GTACGAACTGGTGCACTGCGTCGACATCCCGTACAAGGTCGTCATCAACGAGGCCGTTGAGCTGGCCAAGACCTTCGGTG
GCGTGGAAGGCTACAAGTACGTCAACGGCGTGCTGGACAAGCTGGCCGCCCAGGTCCGCGCCGTGGAAGTCGCCGCCCGC
AGGTAA

Upstream 100 bases:

>100_bases
CCGCGACTGCGCCCGCACCGCCATCGAAATGGCCAACCTGACCGCCGCCCTGGACGGCCTGCAAGACCACGGCCAGGACG
ACGAGAACGAATAAGCGCGT

Downstream 100 bases:

>100_bases
GCCCGGCGTTCCGCTGCCCGTTCCAACCCGCCCCATTCCGCTTCCCGATGGACGCCCACCGCCTGCACACGGCCGCCCGG
CTGGCCAATATCCGCGCCTT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MRKGITMTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHDAQGFNKADRAHFDALLHGAIREEATL
TESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAVEVAAR
R

Sequences:

>Translated_161_residues
MRKGITMTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHDAQGFNKADRAHFDALLHGAIREEATL
TESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAVEVAAR
R
>Mature_161_residues
MRKGITMTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHDAQGFNKADRAHFDALLHGAIREEATL
TESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAVEVAAR
R

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=125, Percent_Identity=44.8, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 17784; Mature: 17784

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKGITMTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHDAQGFNK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCH
ADRAHFDALLHGAIREEATLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKV
HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCHHHHHHHHHHHHHHHHHHCCCHHH
VINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAVEVAARR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKGITMTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHLHDAQGFNK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCH
ADRAHFDALLHGAIREEATLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKV
HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCHHHHHHHHHHHHHHHHHHCCCHHH
VINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAVEVAARR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA