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The map label for this gene is ybdL [C]

Identifier: 17545429

GI number: 17545429

Start: 758312

End: 759496

Strand: Reverse

Name: ybdL [C]

Synonym: RSc0710

Alternate gene names: 17545429

Gene position: 759496-758312 (Counterclockwise)

Preceding gene: 17545430

Following gene: 17545427

Centisome position: 20.44

GC content: 68.1

Gene sequence:

>1185_bases
ATGGACGCCCACCGCCTGCACACGGCCGCCCGGCTGGCCAATATCCGCGCCTTTCACGTGATGGAGCTGGCCAAGCAGGC
CCGTGAGCTGGAGCTGGCGGGCCGCAGCATCATCCACATGGGCATCGGCGAACCGGACTTCACCGCCGCCGAGCCGGTCG
TGCGCGCCGCCGAGGCAGCGATGCGGCGCGGCGTGACCCAATACACGGGCGCACTCGGCATCCGCCCGCTGCGCGAGGCC
ATCGCCCGCTATTACCACACCGTCTACGGGCTCGACATCGCGCCCGAGCGCATCATCGTCACGGCCGGAGCGTCGGCGGC
GCTGCTGCTGGCGTGCGCGGTGCTGGTGGAGATCGGCGGTGAGGTGCTGATGCCCGATCCGAGCTATCCGTGCAACCGCC
ATTTTGTGCCGGCCTTCGACGGCGTGGCGCGGCTGGTGCCGTCCGGCCCGCAGACGCGCTTCCAGCTGAGCGCCGAACAG
GTGGAGGCCAACTGGACCGACCGCACGCAGGGCGTGTTGCTGGCCTCGCCATCCAACCCGACCGGCACGTCGATCCTGCC
GGACGAGTTGCGGCGCATCGTCGAGACGGTGCGTGGGCGTGGCGGATTCTCCATCGTGGACGAGATCTACCAGGGATTGT
CGTACGACCAGGCACCGGTCTCGGCACTGTCGTTCGGCGACGATGTCGTCACGATCAACAGCTTTTCCAAGTATTTCAAC
ATGACCGGCTGGCGGCTCGGCTGGCTGGTGGCCCCCACCGAGCTGGTGCCGCAATTCGAGAAGGTCGCGCAGAACCTGTT
CATCTGTGCCTCGGCCGTGGCACAGCATGCGGCGCTCGCCTGCTTCGAGCCGGAGGCGCTGGCGATCTATGAAGGCCGCA
AGGCGGAGTTCCACCGCCGGCGGGATTTCATCGTGCCGGCGCTGGAGTCGCTCGGCTTCCAGGTGCCGGTCAAACCGGAC
GGCGCCTTCTATGTCTATGCCGACTGCCGCGGCGTCAACCACCCGCACGCCGGCGACGCCGACGCGTTGACCCAATCGAT
GCTCAATGATGCCGGCGTGGTGCTGGTGCCCGGGCTGGATTTCGGGCCGTACACGGCGCACCACTACATCCGCCTGTCGT
ACGCCACGGCGATGGATCACCTGGAAGAAGCCGTGGCGCGGCTCGCCAGGCTGTTCCGCCGCTGA

Upstream 100 bases:

>100_bases
TGGACAAGCTGGCCGCCCAGGTCCGCGCCGTGGAAGTCGCCGCCCGCAGGTAAGCCCGGCGTTCCGCTGCCCGTTCCAAC
CCGCCCCATTCCGCTTCCCG

Downstream 100 bases:

>100_bases
GCCTCCGCCCTCGCCCTTTCTCCCAAAGAAAAAGGCCGTCGTAGCGACGGCCTTTCTTTTTCCATGGCGCCGGGGCTCGG
AATCAAGCCTGGCCCTGACG

Product: aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MDAHRLHTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGEPDFTAAEPVVRAAEAAMRRGVTQYTGALGIRPLREA
IARYYHTVYGLDIAPERIIVTAGASAALLLACAVLVEIGGEVLMPDPSYPCNRHFVPAFDGVARLVPSGPQTRFQLSAEQ
VEANWTDRTQGVLLASPSNPTGTSILPDELRRIVETVRGRGGFSIVDEIYQGLSYDQAPVSALSFGDDVVTINSFSKYFN
MTGWRLGWLVAPTELVPQFEKVAQNLFICASAVAQHAALACFEPEALAIYEGRKAEFHRRRDFIVPALESLGFQVPVKPD
GAFYVYADCRGVNHPHAGDADALTQSMLNDAGVVLVPGLDFGPYTAHHYIRLSYATAMDHLEEAVARLARLFRR

Sequences:

>Translated_394_residues
MDAHRLHTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGEPDFTAAEPVVRAAEAAMRRGVTQYTGALGIRPLREA
IARYYHTVYGLDIAPERIIVTAGASAALLLACAVLVEIGGEVLMPDPSYPCNRHFVPAFDGVARLVPSGPQTRFQLSAEQ
VEANWTDRTQGVLLASPSNPTGTSILPDELRRIVETVRGRGGFSIVDEIYQGLSYDQAPVSALSFGDDVVTINSFSKYFN
MTGWRLGWLVAPTELVPQFEKVAQNLFICASAVAQHAALACFEPEALAIYEGRKAEFHRRRDFIVPALESLGFQVPVKPD
GAFYVYADCRGVNHPHAGDADALTQSMLNDAGVVLVPGLDFGPYTAHHYIRLSYATAMDHLEEAVARLARLFRR
>Mature_394_residues
MDAHRLHTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGEPDFTAAEPVVRAAEAAMRRGVTQYTGALGIRPLREA
IARYYHTVYGLDIAPERIIVTAGASAALLLACAVLVEIGGEVLMPDPSYPCNRHFVPAFDGVARLVPSGPQTRFQLSAEQ
VEANWTDRTQGVLLASPSNPTGTSILPDELRRIVETVRGRGGFSIVDEIYQGLSYDQAPVSALSFGDDVVTINSFSKYFN
MTGWRLGWLVAPTELVPQFEKVAQNLFICASAVAQHAALACFEPEALAIYEGRKAEFHRRRDFIVPALESLGFQVPVKPD
GAFYVYADCRGVNHPHAGDADALTQSMLNDAGVVLVPGLDFGPYTAHHYIRLSYATAMDHLEEAVARLARLFRR

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=417, Percent_Identity=26.378896882494, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI169881279, Length=417, Percent_Identity=26.378896882494, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI56713256, Length=347, Percent_Identity=26.8011527377522, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI56713254, Length=347, Percent_Identity=26.8011527377522, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI4507369, Length=371, Percent_Identity=22.3719676549865, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI169881281, Length=264, Percent_Identity=25.3787878787879, Blast_Score=93, Evalue=5e-19,
Organism=Escherichia coli, GI1786816, Length=363, Percent_Identity=28.3746556473829, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788722, Length=376, Percent_Identity=27.9255319148936, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788627, Length=413, Percent_Identity=26.634382566586, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787710, Length=186, Percent_Identity=29.5698924731183, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71994472, Length=395, Percent_Identity=25.8227848101266, Blast_Score=118, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI71994476, Length=396, Percent_Identity=25.7575757575758, Blast_Score=118, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17567369, Length=290, Percent_Identity=26.2068965517241, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17567663, Length=384, Percent_Identity=24.21875, Blast_Score=96, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6322401, Length=392, Percent_Identity=24.4897959183673, Blast_Score=107, Evalue=2e-24,
Organism=Drosophila melanogaster, GI28573069, Length=393, Percent_Identity=26.7175572519084, Blast_Score=128, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24646114, Length=393, Percent_Identity=26.7175572519084, Blast_Score=128, Evalue=6e-30,
Organism=Drosophila melanogaster, GI28573067, Length=393, Percent_Identity=26.7175572519084, Blast_Score=128, Evalue=6e-30,
Organism=Drosophila melanogaster, GI28573065, Length=393, Percent_Identity=26.7175572519084, Blast_Score=128, Evalue=6e-30,
Organism=Drosophila melanogaster, GI18859735, Length=374, Percent_Identity=23.5294117647059, Blast_Score=97, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 43113; Mature: 43113

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAHRLHTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGEPDFTAAEPVVRAAEAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
MRRGVTQYTGALGIRPLREAIARYYHTVYGLDIAPERIIVTAGASAALLLACAVLVEIGG
HHCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCC
EVLMPDPSYPCNRHFVPAFDGVARLVPSGPQTRFQLSAEQVEANWTDRTQGVLLASPSNP
CEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCCCCCEEEECCCCC
TGTSILPDELRRIVETVRGRGGFSIVDEIYQGLSYDQAPVSALSFGDDVVTINSFSKYFN
CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCCEEEECCHHHHHC
MTGWRLGWLVAPTELVPQFEKVAQNLFICASAVAQHAALACFEPEALAIYEGRKAEFHRR
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCHHHHHHH
RDFIVPALESLGFQVPVKPDGAFYVYADCRGVNHPHAGDADALTQSMLNDAGVVLVPGLD
HHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC
FGPYTAHHYIRLSYATAMDHLEEAVARLARLFRR
CCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDAHRLHTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGEPDFTAAEPVVRAAEAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
MRRGVTQYTGALGIRPLREAIARYYHTVYGLDIAPERIIVTAGASAALLLACAVLVEIGG
HHCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCC
EVLMPDPSYPCNRHFVPAFDGVARLVPSGPQTRFQLSAEQVEANWTDRTQGVLLASPSNP
CEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCCCCCEEEECCCCC
TGTSILPDELRRIVETVRGRGGFSIVDEIYQGLSYDQAPVSALSFGDDVVTINSFSKYFN
CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCCEEEECCHHHHHC
MTGWRLGWLVAPTELVPQFEKVAQNLFICASAVAQHAALACFEPEALAIYEGRKAEFHRR
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCHHHHHHH
RDFIVPALESLGFQVPVKPDGAFYVYADCRGVNHPHAGDADALTQSMLNDAGVVLVPGLD
HHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC
FGPYTAHHYIRLSYATAMDHLEEAVARLARLFRR
CCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]