Click here to switch to the map view.

The map label for this gene is yjiR [H]

Identifier: 17545318

GI number: 17545318

Start: 644479

End: 645993

Strand: Direct

Name: yjiR [H]

Synonym: RSc0599

Alternate gene names: 17545318

Gene position: 644479-645993 (Clockwise)

Preceding gene: 17545316

Following gene: 17545325

Centisome position: 17.34

GC content: 71.88

Gene sequence:

>1515_bases
ATGGGCGACAGCGCCCATTCCGCTCCTGCCGCCATGTCCGTGATCGAGCTGACTCCCGCCCCTGCCGTGCGCCCGCCTGG
CGCGCAGCCGCTGTATCGCATGCTGGCCGACCACTACCTCGGCGCCATGCGCAGCGGCGTGCTCACGCCCGGCCAGCGCA
TGCCGTCCGTCCGCACGCTGATGCGCACGCACAGCGTCAGCCTGTCGACCGCGCTGCAGGTCTGCCGCCATCTGGAGGCC
GAAGGGTGGCTGGAGGCGCGCGAGCGCTCGGGCTATTTCGTGCGCCAGCCGCGGCGCGCGCTGCTGGCGCCGGCCAAGGA
GCCGGAAGTGGCCACGCCCGACCCGGCCGCCTACGTGGGCGTGCATGCGCGGGTGTCGGCCATCATCGCGCGCGGGCTGC
AGGCCCGGGCCCGGGTCGACCTGTCGGGCGCCAGCGGCGCGGCCACGCTGTATCCGTCCGCTGTGCTCAACCGCATCGCC
ACGCAGATGCTGCGCGCGCGTCCGCTGCTGCTGACGCAGGCCGTCACGCCCAACGGGCATCCGGATTTGCAGAGCGCCGT
GGCGCGCCGCGCGCTCGAAATGGGCGTGCAGGTGGCGCCGGACGACGTGGTGGTCACGCACGGCTGCATCGAGGCGGTGA
ACCTGGCGCTGCGCGCGGTGGCGCAGCCGGGCGATACGGTGGCGGTGGAGTCGCCCACCTACTACGGCCTGCTGCAGGTG
CTCGAATGCCTGGGCATGCGCGCGGTGGAGATCCCCACCAGCCCGCGCACCGGCATCTCGCTGGAAGCGCTGGAGATGGC
GGTGCAGGCCTATGGCAACATCCGCGCGGTGGTGGTGGTGCCCAATCTGCAGAACCCGCTCGGCAGCATCATGCCGGACG
CGGCCAAGCGGCGGCTGGCGGCCTTCTGCGAAGCGCACGCCATCCCGCTGATCGAAGACGATACCTACAGCGCCCTGGGC
GACGGCCCCGCGCCGCTCAAGGCCATCAAGGCCTGGGACCGCACCGGCAACGTGATCTACTGCGCCTCGCTCAACAAGAC
GATCGCGCCGGGCCTGCGGCTCGGATGGATGACGGGCGGCCGCTGGCAAGAGCGCGTGGAGATGCTGAAGTTCGCGCAGT
CGCGCCCGAACGATTCATGGTCGCAGGTGACGGCCGCGCGCCTGCTGGCATCCGGCGCGTACGACCGCCATATCCGCACC
TTGCGCCAGACGCTGCGCGAGCAGCGCGAGCGCATGGCCGAGGCGATCGCCGGCTGCTTCCCGGCCGGCACGCGGCTGTC
GGTGCCGGCCGGCGGCGTGGCGATGTGGGTGGAGCTGCCGGCCAGCGTGTCGTCGATGGCGCTGTTCGAGATGGCGCTGG
CGCATGGCATCCGCATTGCGCCGGGGACGATGTTCTCCAACCTGAACCGCTTCGACCACTACTTCCGCATCTGCTTCGGC
CTGCCGTACACGGCCGAGGTGGAGACGGCGCTGGCGCAGCTCGGCCGGCTCGCGCACCAGCTGGCCGAAGCCTAG

Upstream 100 bases:

>100_bases
CGTTAACGATTGCACCAGAGCAGGGCAGGCGAGGCCGTCATCTGTTACGGTACGCTTTACGCCCGTCTGTATCTGTTCCG
ATCGACCCGGCCGTCGCAAG

Downstream 100 bases:

>100_bases
CGGCACCAGGCGGGCAGGCCCTTGCCCGGCGCTTCGAGGCTGCGCACGCTCTCCGCGATGCGCTGCGACCACTGCCGGAC
CACGCCCTGCGTCGCCGTCA

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MGDSAHSAPAAMSVIELTPAPAVRPPGAQPLYRMLADHYLGAMRSGVLTPGQRMPSVRTLMRTHSVSLSTALQVCRHLEA
EGWLEARERSGYFVRQPRRALLAPAKEPEVATPDPAAYVGVHARVSAIIARGLQARARVDLSGASGAATLYPSAVLNRIA
TQMLRARPLLLTQAVTPNGHPDLQSAVARRALEMGVQVAPDDVVVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQV
LECLGMRAVEIPTSPRTGISLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEAHAIPLIEDDTYSALG
DGPAPLKAIKAWDRTGNVIYCASLNKTIAPGLRLGWMTGGRWQERVEMLKFAQSRPNDSWSQVTAARLLASGAYDRHIRT
LRQTLREQRERMAEAIAGCFPAGTRLSVPAGGVAMWVELPASVSSMALFEMALAHGIRIAPGTMFSNLNRFDHYFRICFG
LPYTAEVETALAQLGRLAHQLAEA

Sequences:

>Translated_504_residues
MGDSAHSAPAAMSVIELTPAPAVRPPGAQPLYRMLADHYLGAMRSGVLTPGQRMPSVRTLMRTHSVSLSTALQVCRHLEA
EGWLEARERSGYFVRQPRRALLAPAKEPEVATPDPAAYVGVHARVSAIIARGLQARARVDLSGASGAATLYPSAVLNRIA
TQMLRARPLLLTQAVTPNGHPDLQSAVARRALEMGVQVAPDDVVVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQV
LECLGMRAVEIPTSPRTGISLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEAHAIPLIEDDTYSALG
DGPAPLKAIKAWDRTGNVIYCASLNKTIAPGLRLGWMTGGRWQERVEMLKFAQSRPNDSWSQVTAARLLASGAYDRHIRT
LRQTLREQRERMAEAIAGCFPAGTRLSVPAGGVAMWVELPASVSSMALFEMALAHGIRIAPGTMFSNLNRFDHYFRICFG
LPYTAEVETALAQLGRLAHQLAEA
>Mature_503_residues
GDSAHSAPAAMSVIELTPAPAVRPPGAQPLYRMLADHYLGAMRSGVLTPGQRMPSVRTLMRTHSVSLSTALQVCRHLEAE
GWLEARERSGYFVRQPRRALLAPAKEPEVATPDPAAYVGVHARVSAIIARGLQARARVDLSGASGAATLYPSAVLNRIAT
QMLRARPLLLTQAVTPNGHPDLQSAVARRALEMGVQVAPDDVVVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQVL
ECLGMRAVEIPTSPRTGISLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEAHAIPLIEDDTYSALGD
GPAPLKAIKAWDRTGNVIYCASLNKTIAPGLRLGWMTGGRWQERVEMLKFAQSRPNDSWSQVTAARLLASGAYDRHIRTL
RQTLREQRERMAEAIAGCFPAGTRLSVPAGGVAMWVELPASVSSMALFEMALAHGIRIAPGTMFSNLNRFDHYFRICFGL
PYTAEVETALAQLGRLAHQLAEA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=278, Percent_Identity=25.1798561151079, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI33469970, Length=278, Percent_Identity=25.1798561151079, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI1790797, Length=479, Percent_Identity=34.6555323590814, Blast_Score=273, Evalue=3e-74,
Organism=Escherichia coli, GI1787710, Length=474, Percent_Identity=34.5991561181435, Blast_Score=267, Evalue=1e-72,
Organism=Saccharomyces cerevisiae, GI6321000, Length=224, Percent_Identity=25, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54246; Mature: 54115

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDSAHSAPAAMSVIELTPAPAVRPPGAQPLYRMLADHYLGAMRSGVLTPGQRMPSVRTL
CCCCCCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
MRTHSVSLSTALQVCRHLEAEGWLEARERSGYFVRQPRRALLAPAKEPEVATPDPAAYVG
HHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCCCCCHHHHH
VHARVSAIIARGLQARARVDLSGASGAATLYPSAVLNRIATQMLRARPLLLTQAVTPNGH
HHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCC
PDLQSAVARRALEMGVQVAPDDVVVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQV
CHHHHHHHHHHHHCCCEECCCCEEEEHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
LECLGMRAVEIPTSPRTGISLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRLA
HHHHCCEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCHHHHHHHH
AFCEAHAIPLIEDDTYSALGDGPAPLKAIKAWDRTGNVIYCASLNKTIAPGLRLGWMTGG
HHHHHCCCCEECCCCCHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCCC
RWQERVEMLKFAQSRPNDSWSQVTAARLLASGAYDRHIRTLRQTLREQRERMAEAIAGCF
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAGTRLSVPAGGVAMWVELPASVSSMALFEMALAHGIRIAPGTMFSNLNRFDHYFRICFG
CCCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHC
LPYTAEVETALAQLGRLAHQLAEA
CCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GDSAHSAPAAMSVIELTPAPAVRPPGAQPLYRMLADHYLGAMRSGVLTPGQRMPSVRTL
CCCCCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
MRTHSVSLSTALQVCRHLEAEGWLEARERSGYFVRQPRRALLAPAKEPEVATPDPAAYVG
HHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCCCCCHHHHH
VHARVSAIIARGLQARARVDLSGASGAATLYPSAVLNRIATQMLRARPLLLTQAVTPNGH
HHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCC
PDLQSAVARRALEMGVQVAPDDVVVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQV
CHHHHHHHHHHHHCCCEECCCCEEEEHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
LECLGMRAVEIPTSPRTGISLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRLA
HHHHCCEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCHHHHHHHH
AFCEAHAIPLIEDDTYSALGDGPAPLKAIKAWDRTGNVIYCASLNKTIAPGLRLGWMTGG
HHHHHCCCCEECCCCCHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCCC
RWQERVEMLKFAQSRPNDSWSQVTAARLLASGAYDRHIRTLRQTLREQRERMAEAIAGCF
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAGTRLSVPAGGVAMWVELPASVSSMALFEMALAHGIRIAPGTMFSNLNRFDHYFRICFG
CCCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHC
LPYTAEVETALAQLGRLAHQLAEA
CCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]