Click here to switch to the map view.

The map label for this gene is 17545278

Identifier: 17545278

GI number: 17545278

Start: 603351

End: 605060

Strand: Direct

Name: 17545278

Synonym: RSc0559

Alternate gene names: NA

Gene position: 603351-605060 (Clockwise)

Preceding gene: 17545277

Following gene: 17545280

Centisome position: 16.23

GC content: 60.99

Gene sequence:

>1710_bases
TTGTTGTGGCCGGTCTGGCTGGCCACAGTTGCGTGCTGGTCTGTCCCGTTCCTGGTGGCTGTCCATAGTTACCCGATCCC
AACGTTCTACAGCGAATTCGTAGCGGCGATCGGCTGGGTTGCTCTGGCAGCGGGCGTGCTGGGCTCGACGTGGCATAGCA
AGGCAGGGCTACCCAAGGTTGTCTTGGCGCCGCTGGCGCTGATCGGTGTGTTGATCGTGCAACTGGTCGTTGCCACGCCG
CTGAACCCGTTTTTTACCTTTGCGGCCATCGTGTTTCTGCTCGGAACCGTGGCCGTATGCGGTCTCGGTGCGCGCTGCCG
CGACGTCCCCGGTGTGCTGGAGTCGATCGCGGTTGCCGTCATCATTGGCGGATTGCTGACGGTGGCGATTGAGTGTCTGC
ACCTGTTCCGTGTTTCTGGCCTGCCGATCAATTGGATCTCGATCATGCCAACGGGCGCAGGCCGCCGGATGTGGGGCAAC
CTGAATCAGCCGAATCACGTGGCGACCTATCTCGCCTTTGGTCTGGCAGCGTGTCTGTTCTTGGGTTCGACGCGTCGGCG
ATATTGGGCGCCCCTGGCTGCCATCGCTCTGGCATTGTTGTTGGGCATGGCGCTGACGGTTTCCCGGATGAGCTGGCTTC
ACCTTGTCCTGGTTGGGGGCGTCGCAGGGCTGGCCTGGTCAGCAGAGGAGCGGGGGGCTCGCCGCTGGATTCGGGCGGGC
GTGCCTGTGCTCGGCCTGGCCGTGGTTTATCAGCTCTGCAACTGGCTGGTGGCCTATGCCAACGTGCTTTGGCATCTGGA
CTTGCCGATCTCGCTGGACGAGCGGTTGCAGCAGGGTGTGGGTCTGCGGGTGTTCCTATGGAAGCATGCGTGGCACATGT
TCCTGGCCCATCCCTGGCTCGGCGGCGGCTGGGGCGACTATGCCTGGAACCAGTACGTGCAGACCGACGTGCTCGGCCAT
GTCGAAATGTCCATGAACGCCCACAACCTCGTCCTGGATCTCCTGGCCAAGGTGGGTGTGTTCGGGTTGCTGGCCGTGAT
GCTGCCGTTCTTGGGGTTGGTGCATGCTGCGTGGAAACGGCGAATGACGCCCGCGCTGGCCTTTCTGTATGCGGTCATTT
TGGTGACCGTGGCGCATTCGATGCTGGAATATCCGCTGCACTATCTGTACTTCCTGCTGCCGTTTGCTTTCGCGCTGGGG
TATGTGGATGACCGCAAGTCGCGCGTTCTTTCCCCAGACACGGCATGGGTACTGACCGGCATCGTGGCAATATGCGGTGC
CGTGCTGACGGGCCGGATGTGGATCGACTACCAATCGGTGGAGCGCTTGTATTACTCCCTCGACGGTCCGGTGGAATTGC
AACGGTACCAGCGCAGTGGGCAACTGCTGCTGGTCCCATATGGCAACCTGTCAATCGCGAACAATGCCGGGATGACGGCC
GAGACGGCGCCGATCATGGCTGCGGTCGAACACCAGGCTGTGCAGTTCTATCCTGGTTCTGGCACGGTTCAACGTTGGGC
GATTGCGCTCGCGTTTCAAGGCAAGACCGACGAAGCCCTCACCCAGGTTCGTCGGCTGCACAATCAATACTGGATCGACT
ATGCGGGCGATTCGAAATTGCTGACACTCGTCTGCACCAAGAAATTGGAAGGGTTGGCTACGTTCTGCGCGCGGCTCAAG
GCGGAGAACTTGGTTGTCGGTGTAGATTGA

Upstream 100 bases:

>100_bases
AAGCTAAGCTAGCTGCTGTAGTAAGAGCGCCTTTGGGCGCTCTTTTTGTTTCGCCATATTCGTGTCCTGCCCATCAATGC
TTCCAGTTCATCGTTCCCTG

Downstream 100 bases:

>100_bases
GGATTGCGTCTCAAAAAGAAAGCGCCTCGTTGAAGGCGCTTTTTTTTTTCGGCAATGACAACCAAAGCAAAGTGGGCACA
GCGCGACGTGGCAAGCTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: O-Antigen Polymerase Family Protein; O-Antigen Ligase; Lipopolysaccharide Biosynthesis Protein; Lipid A Core; O-Antigen Ligase And Related S

Number of amino acids: Translated: 569; Mature: 569

Protein sequence:

>569_residues
MLWPVWLATVACWSVPFLVAVHSYPIPTFYSEFVAAIGWVALAAGVLGSTWHSKAGLPKVVLAPLALIGVLIVQLVVATP
LNPFFTFAAIVFLLGTVAVCGLGARCRDVPGVLESIAVAVIIGGLLTVAIECLHLFRVSGLPINWISIMPTGAGRRMWGN
LNQPNHVATYLAFGLAACLFLGSTRRRYWAPLAAIALALLLGMALTVSRMSWLHLVLVGGVAGLAWSAEERGARRWIRAG
VPVLGLAVVYQLCNWLVAYANVLWHLDLPISLDERLQQGVGLRVFLWKHAWHMFLAHPWLGGGWGDYAWNQYVQTDVLGH
VEMSMNAHNLVLDLLAKVGVFGLLAVMLPFLGLVHAAWKRRMTPALAFLYAVILVTVAHSMLEYPLHYLYFLLPFAFALG
YVDDRKSRVLSPDTAWVLTGIVAICGAVLTGRMWIDYQSVERLYYSLDGPVELQRYQRSGQLLLVPYGNLSIANNAGMTA
ETAPIMAAVEHQAVQFYPGSGTVQRWAIALAFQGKTDEALTQVRRLHNQYWIDYAGDSKLLTLVCTKKLEGLATFCARLK
AENLVVGVD

Sequences:

>Translated_569_residues
MLWPVWLATVACWSVPFLVAVHSYPIPTFYSEFVAAIGWVALAAGVLGSTWHSKAGLPKVVLAPLALIGVLIVQLVVATP
LNPFFTFAAIVFLLGTVAVCGLGARCRDVPGVLESIAVAVIIGGLLTVAIECLHLFRVSGLPINWISIMPTGAGRRMWGN
LNQPNHVATYLAFGLAACLFLGSTRRRYWAPLAAIALALLLGMALTVSRMSWLHLVLVGGVAGLAWSAEERGARRWIRAG
VPVLGLAVVYQLCNWLVAYANVLWHLDLPISLDERLQQGVGLRVFLWKHAWHMFLAHPWLGGGWGDYAWNQYVQTDVLGH
VEMSMNAHNLVLDLLAKVGVFGLLAVMLPFLGLVHAAWKRRMTPALAFLYAVILVTVAHSMLEYPLHYLYFLLPFAFALG
YVDDRKSRVLSPDTAWVLTGIVAICGAVLTGRMWIDYQSVERLYYSLDGPVELQRYQRSGQLLLVPYGNLSIANNAGMTA
ETAPIMAAVEHQAVQFYPGSGTVQRWAIALAFQGKTDEALTQVRRLHNQYWIDYAGDSKLLTLVCTKKLEGLATFCARLK
AENLVVGVD
>Mature_569_residues
MLWPVWLATVACWSVPFLVAVHSYPIPTFYSEFVAAIGWVALAAGVLGSTWHSKAGLPKVVLAPLALIGVLIVQLVVATP
LNPFFTFAAIVFLLGTVAVCGLGARCRDVPGVLESIAVAVIIGGLLTVAIECLHLFRVSGLPINWISIMPTGAGRRMWGN
LNQPNHVATYLAFGLAACLFLGSTRRRYWAPLAAIALALLLGMALTVSRMSWLHLVLVGGVAGLAWSAEERGARRWIRAG
VPVLGLAVVYQLCNWLVAYANVLWHLDLPISLDERLQQGVGLRVFLWKHAWHMFLAHPWLGGGWGDYAWNQYVQTDVLGH
VEMSMNAHNLVLDLLAKVGVFGLLAVMLPFLGLVHAAWKRRMTPALAFLYAVILVTVAHSMLEYPLHYLYFLLPFAFALG
YVDDRKSRVLSPDTAWVLTGIVAICGAVLTGRMWIDYQSVERLYYSLDGPVELQRYQRSGQLLLVPYGNLSIANNAGMTA
ETAPIMAAVEHQAVQFYPGSGTVQRWAIALAFQGKTDEALTQVRRLHNQYWIDYAGDSKLLTLVCTKKLEGLATFCARLK
AENLVVGVD

Specific function: Unknown

COG id: COG3307

COG function: function code M; Lipid A core - O-antigen ligase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62436; Mature: 62436

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EHHHHHHHHHHHHHHHHHHHHCCEEEECC
>Mature Secondary Structure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EHHHHHHHHHHHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA