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The map label for this gene is ybeY [C]

Identifier: 17545248

GI number: 17545248

Start: 567881

End: 568648

Strand: Reverse

Name: ybeY [C]

Synonym: RSc0529

Alternate gene names: 17545248

Gene position: 568648-567881 (Counterclockwise)

Preceding gene: 17545249

Following gene: 17545247

Centisome position: 15.3

GC content: 69.92

Gene sequence:

>768_bases
GTGGCTAAACCGAAGAAGACCCAACCCGCCGCCACCGCCCCCCGCGTCGACGTGTTCGACGCCAAGGGCAAGCCGAAGAC
GGTGGACGCCAGCGCCCTGCGCATCGCCTTCGCCGACGGCCGCAGCCTGCTCGTCAGCCTGCCGGACACGGCCGACGGCG
CCATCACCCTGGTGGCCGAGCACGCCGATGCCGCCACGCACGCCATGCTGGCGCTGCGCCCCGAGCACCACGACAGCATC
ACGCTGCGCATCGAGGCCGAGCCGGCCGCCGAAGCGGAAGACGCCGACGACGCGCTGGCCGGCGCCGAGATGCTCACGCT
GGACCTGACCGTGCAGCACGGCGACGCGCTCAAGGCCGCCGCCCGCAAGGCACTCCCCAAGCAGAAGGACATCGAAGCGT
GGATCGCGCCCGCGCTGTTCGCCGATGCGCAGCTCAACGTGCGCTTCGTCGACGAGGAAGAAGGCCGCACGCTCAACCAC
ACCTATCGCGGCAAGGACTACGCCACCAACGTGCTGACCTTCTCCTACGCGGAGACCGAAGACGACCCGGTCGCCGCCGA
CATCGTGCTGTGCTGCCCGGTGGTCGAGCAGGAAGCCAAGGACCAGGGCAAGCCGCTGCGCGCCCACTACGCGCACCTGA
TCGTGCACGGCGCGCTGCACGCCCAGGGCTACGACCATGAAGACCCGGCCCAAGCCGAAGAAATGGAAGGCATCGAGACC
GAGGTCCTCGCCGGGCTCGGTTTCCCCGACCCGTACGCGGACCGCTGA

Upstream 100 bases:

>100_bases
TGACGCGCTTCTCCAGCGTCGACGTGGTGCGGCACCCGCTGGTCGCCCGCATCGTCGAGGCCTATGACGAATTCCATGCA
CAGCACAAGGACACCTGACC

Downstream 100 bases:

>100_bases
CGCACAAAGCGCCGGCCCCGCGCCAGCGCACGGCCCAGCGCGTCTGTGTGAAAGGCACGCCACCCACCCGGATGCCCCCC
CTGCCGGAGCAACCGCCCGC

Product: unkown domain/ metalloprotease fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MAKPKKTQPAATAPRVDVFDAKGKPKTVDASALRIAFADGRSLLVSLPDTADGAITLVAEHADAATHAMLALRPEHHDSI
TLRIEAEPAAEAEDADDALAGAEMLTLDLTVQHGDALKAAARKALPKQKDIEAWIAPALFADAQLNVRFVDEEEGRTLNH
TYRGKDYATNVLTFSYAETEDDPVAADIVLCCPVVEQEAKDQGKPLRAHYAHLIVHGALHAQGYDHEDPAQAEEMEGIET
EVLAGLGFPDPYADR

Sequences:

>Translated_255_residues
MAKPKKTQPAATAPRVDVFDAKGKPKTVDASALRIAFADGRSLLVSLPDTADGAITLVAEHADAATHAMLALRPEHHDSI
TLRIEAEPAAEAEDADDALAGAEMLTLDLTVQHGDALKAAARKALPKQKDIEAWIAPALFADAQLNVRFVDEEEGRTLNH
TYRGKDYATNVLTFSYAETEDDPVAADIVLCCPVVEQEAKDQGKPLRAHYAHLIVHGALHAQGYDHEDPAQAEEMEGIET
EVLAGLGFPDPYADR
>Mature_254_residues
AKPKKTQPAATAPRVDVFDAKGKPKTVDASALRIAFADGRSLLVSLPDTADGAITLVAEHADAATHAMLALRPEHHDSIT
LRIEAEPAAEAEDADDALAGAEMLTLDLTVQHGDALKAAARKALPKQKDIEAWIAPALFADAQLNVRFVDEEEGRTLNHT
YRGKDYATNVLTFSYAETEDDPVAADIVLCCPVVEQEAKDQGKPLRAHYAHLIVHGALHAQGYDHEDPAQAEEMEGIETE
VLAGLGFPDPYADR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=136, Percent_Identity=44.1176470588235, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 27430; Mature: 27299

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPKKTQPAATAPRVDVFDAKGKPKTVDASALRIAFADGRSLLVSLPDTADGAITLVAE
CCCCCCCCCCCCCCCEEEEECCCCCCEECCCEEEEEEECCCEEEEECCCCCCCEEEEEEE
HADAATHAMLALRPEHHDSITLRIEAEPAAEAEDADDALAGAEMLTLDLTVQHGDALKAA
CCCCHHEEEEEECCCCCCEEEEEEECCCCCCCCCCCHHHCCCEEEEEEEEEECCCHHHHH
ARKALPKQKDIEAWIAPALFADAQLNVRFVDEEEGRTLNHTYRGKDYATNVLTFSYAETE
HHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCEECEEECCCCCCCEEEEEEECCCC
DDPVAADIVLCCPVVEQEAKDQGKPLRAHYAHLIVHGALHAQGYDHEDPAQAEEMEGIET
CCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHH
EVLAGLGFPDPYADR
HHHHCCCCCCCCCCC
>Mature Secondary Structure 
AKPKKTQPAATAPRVDVFDAKGKPKTVDASALRIAFADGRSLLVSLPDTADGAITLVAE
CCCCCCCCCCCCCCEEEEECCCCCCEECCCEEEEEEECCCEEEEECCCCCCCEEEEEEE
HADAATHAMLALRPEHHDSITLRIEAEPAAEAEDADDALAGAEMLTLDLTVQHGDALKAA
CCCCHHEEEEEECCCCCCEEEEEEECCCCCCCCCCCHHHCCCEEEEEEEEEECCCHHHHH
ARKALPKQKDIEAWIAPALFADAQLNVRFVDEEEGRTLNHTYRGKDYATNVLTFSYAETE
HHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCEECEEECCCCCCCEEEEEEECCCC
DDPVAADIVLCCPVVEQEAKDQGKPLRAHYAHLIVHGALHAQGYDHEDPAQAEEMEGIET
CCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHH
EVLAGLGFPDPYADR
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]