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The map label for this gene is 17545092

Identifier: 17545092

GI number: 17545092

Start: 400617

End: 401219

Strand: Direct

Name: 17545092

Synonym: RSc0373

Alternate gene names: NA

Gene position: 400617-401219 (Clockwise)

Preceding gene: 17545091

Following gene: 17545095

Centisome position: 10.78

GC content: 65.01

Gene sequence:

>603_bases
ATGCTCGTCTTCCGATTCTTCCGCACCGCGCTGTTCGCCATGCTGGCAGCCGCCGCGCTGGCGCTGGCCGCCTGCAGCGA
CAAGCCGGCCTTCCAGAATCTCGACATCACCGGCGCCAAGAGCTTCGGCGCCGGCTTCTCGCTGACCGATCACACCGGCA
AGCGCCGCACGCTGGAGGATTTCCGCGGCAAGGTGGTCGTGATGTTCTTCGGCTACACGCATTGCCCGGACGTCTGTCCG
ACCACGCTGGCCGAGCTGCGCGGCGTGATGGACGGGCTCGGCAAGGATGCCGACCGCGTGCAGGTACTGTTCGTCACCGT
CGATCCGCAGCGCGATACGCAGGACTTGCTGGCCAAGTATGTGCCCGCTTTCGATCCGCGCTTCATCGGCCTGCGCCCGG
CCAACGACCAGGAGCTGCAGAAGGTCGCCAAGGACTTCAAGGTGTTCTACAGCAAGGTGCCCGGCAGCACGCCCGACAAC
TACACGATGGACCACACCGCCGGCAGCTACATGTTCGACCCGAAGGGCAATCTGCGGCTGTTCATCAAGCATGGCCAGGG
GCCCGCGCCGATCGTGCACGACATCAAGCTGCTGCTGGACTGA

Upstream 100 bases:

>100_bases
CAAGTTCGGGCCGCAGGGCGCGGCGCTGTGACGCATCGGGCTGTCGGCAAGGGCGCGCGGTTGGCGCTACGCTAGATGGC
CGCCTTCGACACGATCCACC

Downstream 100 bases:

>100_bases
TCCAGCCCGCGCCCAAAGAAAAAGCCCGCCAGTTGGCGGGCTTTTCGTTGCGTGGGCGGTCGATCAGGCAAAAGACTGCA
GCGCGCCCTTCATCTTCTTC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MLVFRFFRTALFAMLAAAALALAACSDKPAFQNLDITGAKSFGAGFSLTDHTGKRRTLEDFRGKVVVMFFGYTHCPDVCP
TTLAELRGVMDGLGKDADRVQVLFVTVDPQRDTQDLLAKYVPAFDPRFIGLRPANDQELQKVAKDFKVFYSKVPGSTPDN
YTMDHTAGSYMFDPKGNLRLFIKHGQGPAPIVHDIKLLLD

Sequences:

>Translated_200_residues
MLVFRFFRTALFAMLAAAALALAACSDKPAFQNLDITGAKSFGAGFSLTDHTGKRRTLEDFRGKVVVMFFGYTHCPDVCP
TTLAELRGVMDGLGKDADRVQVLFVTVDPQRDTQDLLAKYVPAFDPRFIGLRPANDQELQKVAKDFKVFYSKVPGSTPDN
YTMDHTAGSYMFDPKGNLRLFIKHGQGPAPIVHDIKLLLD
>Mature_200_residues
MLVFRFFRTALFAMLAAAALALAACSDKPAFQNLDITGAKSFGAGFSLTDHTGKRRTLEDFRGKVVVMFFGYTHCPDVCP
TTLAELRGVMDGLGKDADRVQVLFVTVDPQRDTQDLLAKYVPAFDPRFIGLRPANDQELQKVAKDFKVFYSKVPGSTPDN
YTMDHTAGSYMFDPKGNLRLFIKHGQGPAPIVHDIKLLLD

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=146, Percent_Identity=37.6712328767123, Blast_Score=116, Evalue=1e-26,
Organism=Homo sapiens, GI281182727, Length=161, Percent_Identity=36.6459627329193, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI281182722, Length=161, Percent_Identity=36.6459627329193, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI281182716, Length=161, Percent_Identity=36.6459627329193, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI153791313, Length=161, Percent_Identity=36.6459627329193, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17531419, Length=164, Percent_Identity=29.8780487804878, Blast_Score=98, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6319498, Length=143, Percent_Identity=39.1608391608392, Blast_Score=108, Evalue=5e-25,
Organism=Saccharomyces cerevisiae, GI6319511, Length=143, Percent_Identity=34.2657342657343, Blast_Score=91, Evalue=8e-20,
Organism=Drosophila melanogaster, GI19920710, Length=143, Percent_Identity=39.1608391608392, Blast_Score=121, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22139; Mature: 22139

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVFRFFRTALFAMLAAAALALAACSDKPAFQNLDITGAKSFGAGFSLTDHTGKRRTLED
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHH
FRGKVVVMFFGYTHCPDVCPTTLAELRGVMDGLGKDADRVQVLFVTVDPQRDTQDLLAKY
HCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHH
VPAFDPRFIGLRPANDQELQKVAKDFKVFYSKVPGSTPDNYTMDHTAGSYMFDPKGNLRL
CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEECCCCCEEE
FIKHGQGPAPIVHDIKLLLD
EEEECCCCCCHHHHHHHHCC
>Mature Secondary Structure
MLVFRFFRTALFAMLAAAALALAACSDKPAFQNLDITGAKSFGAGFSLTDHTGKRRTLED
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHH
FRGKVVVMFFGYTHCPDVCPTTLAELRGVMDGLGKDADRVQVLFVTVDPQRDTQDLLAKY
HCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHH
VPAFDPRFIGLRPANDQELQKVAKDFKVFYSKVPGSTPDNYTMDHTAGSYMFDPKGNLRL
CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEECCCCCEEE
FIKHGQGPAPIVHDIKLLLD
EEEECCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]