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The map label for this gene is secB

Identifier: 17545075

GI number: 17545075

Start: 387052

End: 387573

Strand: Direct

Name: secB

Synonym: RSc0356

Alternate gene names: 17545075

Gene position: 387052-387573 (Clockwise)

Preceding gene: 17545074

Following gene: 17545076

Centisome position: 10.41

GC content: 65.33

Gene sequence:

>522_bases
ATGAGCGACCAGCAACAGCAGCAACCCGGCCAGGACGGCCAGCCGTTCTTCAATATTCAGCGCGTCTACCTGAAGGACCT
GTCGCTGGAGCAGCCGAACTCGCCGCACATCTTCCTGGAGCAGGAGCAGCCGACGGTGGAAGTGCAGGTCGACGTGGCCG
CCACGCAACTGGCCGAGGGCGTGTTCGAAGTCACGGTGATCGGTACGGTCACCACCAAGGTCAAGGAGAAGGTCGCGTTC
CTGGTGGAAGCCAAGCAGGCCGGCATCTTCGACATCCGCAACGTGCCGGTCGAGCAGATGGACCCGCTGCTGGGCATCGC
CTGCCCGACCATCGTGTACCCGTACCTGCGCTCGAACATCGCCGACACCATCGGCCGCGCCGGCTTCCAGCCGATCCACC
TGGCCGAGATCAACTTCCAGGCACTGTACGAGCAGCGCCTGGCCTCTGCCATGGAAGAGGCCCAGGCCGCCGGCGGCAAC
GGCGGCATCGTGATGCCGGACGGCTCCAAGGCCACCCACTGA

Upstream 100 bases:

>100_bases
GGCTCCGATGGCGCCCCGCGTGCCGTCATGTACCATACGCGTCTTGCGCGCCGGGCAGCCTCCGGCCAGCACCGACCCAT
ACCTATTTCGAAGGCGAGTC

Downstream 100 bases:

>100_bases
ACACGATGGCGCATTGCGCCTGATGCCCGCGCCGGCCGACCGCTCGCGCGGGCATTTTTTTGCCTGACTGACTCACACTT
CTAGCTCATGCGGATTTCCG

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MSDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQPTVEVQVDVAATQLAEGVFEVTVIGTVTTKVKEKVAF
LVEAKQAGIFDIRNVPVEQMDPLLGIACPTIVYPYLRSNIADTIGRAGFQPIHLAEINFQALYEQRLASAMEEAQAAGGN
GGIVMPDGSKATH

Sequences:

>Translated_173_residues
MSDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQPTVEVQVDVAATQLAEGVFEVTVIGTVTTKVKEKVAF
LVEAKQAGIFDIRNVPVEQMDPLLGIACPTIVYPYLRSNIADTIGRAGFQPIHLAEINFQALYEQRLASAMEEAQAAGGN
GGIVMPDGSKATH
>Mature_172_residues
SDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQPTVEVQVDVAATQLAEGVFEVTVIGTVTTKVKEKVAFL
VEAKQAGIFDIRNVPVEQMDPLLGIACPTIVYPYLRSNIADTIGRAGFQPIHLAEINFQALYEQRLASAMEEAQAAGGNG
GIVMPDGSKATH

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=145, Percent_Identity=42.7586206896552, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_RALSO (Q8Y2I0)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_518477.1
- ProteinModelPortal:   Q8Y2I0
- SMR:   Q8Y2I0
- GeneID:   1219159
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc0356
- NMPDR:   fig|267608.1.peg.356
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- BioCyc:   RSOL267608:RSC0356-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18909; Mature: 18777

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQPTVEVQVDVAATQLAEG
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEHHHHHHHCC
VFEVTVIGTVTTKVKEKVAFLVEAKQAGIFDIRNVPVEQMDPLLGIACPTIVYPYLRSNI
CEEEEEEEHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHH
ADTIGRAGFQPIHLAEINFQALYEQRLASAMEEAQAAGGNGGIVMPDGSKATH
HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
>Mature Secondary Structure 
SDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQPTVEVQVDVAATQLAEG
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEHHHHHHHCC
VFEVTVIGTVTTKVKEKVAFLVEAKQAGIFDIRNVPVEQMDPLLGIACPTIVYPYLRSNI
CEEEEEEEHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHH
ADTIGRAGFQPIHLAEINFQALYEQRLASAMEEAQAAGGNGGIVMPDGSKATH
HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852