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The map label for this gene is tISRso6a

Identifier: 17544966

GI number: 17544966

Start: 275259

End: 276302

Strand: Direct

Name: tISRso6a

Synonym: RSc0247

Alternate gene names: NA

Gene position: 275259-276302 (Clockwise)

Preceding gene: 17544963

Following gene: 17544967

Centisome position: 7.41

GC content: 62.16

Gene sequence:

>1044_bases
ATGGAAGTACAGATTCTGCGTCGCCAGGGCTGCAGTTTGCGTGCGATCGCAACCGAGACTGGCATGGCCGTGAACACCAT
CAGGAAGTACCTGGTGTCCGGCGCGCCCGAGCGCAAGCCACGCGAGCCGGTGGTGGGCAAGTTGGAGCCGTTCAAGGCCT
TCATACAGTCCCGCGTTGACGCCGCACGTCCGGACTGGATTCCGGCGACGGTGCTGTTGCGCGAGATCGAGGAGCGTGGG
TACACCGGCAAGCTGCGCATTGTTCAGGAATACCTGCAAACGCTGCGGCCCGCCAGCCGGCCCGATCCGGTTGTGCGGTT
CGAGACGGAACCCGGCCAGCAAATGCAGATGGATTGGATCGAATTCCGCAAGACCGGGCACAAGCACGGCATGCTGGCGG
CATTCGTTGCCACGTTGGGATACAGCCGAGCCAGCTATGTCGAGTTCGTTTCCGACATGCGCCTGGAGACCTTGCTCACC
TGCCATGTGCGTGCATTCGATGCCTTTGGCGGAGTCACCAAGGAGATCCTGTACGACAACATGAAGACGGTGATCCTGCA
GCGCAATGCCTACGGTAAGCAACAGCATCGGTACCAACCAGGCTTTGCCGACTTCGCCAAGCACTATGGGTTCGCGCCGC
GCGTGTGCAAGCCCTACCGGGCGAAGACGAAGGGCAAAGTCGAGCGGATGAACGGCTACCTGCGCTACAGCTTCTGGGTC
CCGTTGGCTTCCAAGCTCAAGCAGATCGGCTTGGCTGCGGACAAGGATCTGTGCAATCAACAGGTTGGCCTCTGGCTGCG
GGATGTGGCCAATGTCCGCGTTCACGGCACGACGAAGCGCGTTCCCGTGGACGTCCTGAGAGAGGAACGACCGCATCTGC
TGCCAACGCCGGCACTCTATGCCGGGCGATCGGTGCGCGCCGGTGCAACGCCTCACGAGACGCCCAAGCCGGCCTCCAGG
TTTGCGACGCCGGACTGGCATGTCTGCTTGCAGCACCCGCTGTCCGTCTACGATTCCTTCTGCCAGCAGGGAGTCGCCGC
ATGA

Upstream 100 bases:

>100_bases
ACACGCAGTTGTAAATTGATACGCGGACGCACTTTGGAATTGATACACCTCGTTGTAGGGTCGTCCTTTTTGGGCGCCCG
TGATCAGCTACGAGGATTAC

Downstream 100 bases:

>100_bases
CGCCTCAGCTCGAACGGCTCACCGTCCTGTGCCAGCAGCTCAACCTGCAGCACCTTCCCACACAGCTCGCCCACCTGGGC
CAGATGGCGGCCAAGCGGGA

Product: ISRSO6-transposase ORFA protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MEVQILRRQGCSLRAIATETGMAVNTIRKYLVSGAPERKPREPVVGKLEPFKAFIQSRVDAARPDWIPATVLLREIEERG
YTGKLRIVQEYLQTLRPASRPDPVVRFETEPGQQMQMDWIEFRKTGHKHGMLAAFVATLGYSRASYVEFVSDMRLETLLT
CHVRAFDAFGGVTKEILYDNMKTVILQRNAYGKQQHRYQPGFADFAKHYGFAPRVCKPYRAKTKGKVERMNGYLRYSFWV
PLASKLKQIGLAADKDLCNQQVGLWLRDVANVRVHGTTKRVPVDVLREERPHLLPTPALYAGRSVRAGATPHETPKPASR
FATPDWHVCLQHPLSVYDSFCQQGVAA

Sequences:

>Translated_347_residues
MEVQILRRQGCSLRAIATETGMAVNTIRKYLVSGAPERKPREPVVGKLEPFKAFIQSRVDAARPDWIPATVLLREIEERG
YTGKLRIVQEYLQTLRPASRPDPVVRFETEPGQQMQMDWIEFRKTGHKHGMLAAFVATLGYSRASYVEFVSDMRLETLLT
CHVRAFDAFGGVTKEILYDNMKTVILQRNAYGKQQHRYQPGFADFAKHYGFAPRVCKPYRAKTKGKVERMNGYLRYSFWV
PLASKLKQIGLAADKDLCNQQVGLWLRDVANVRVHGTTKRVPVDVLREERPHLLPTPALYAGRSVRAGATPHETPKPASR
FATPDWHVCLQHPLSVYDSFCQQGVAA
>Mature_347_residues
MEVQILRRQGCSLRAIATETGMAVNTIRKYLVSGAPERKPREPVVGKLEPFKAFIQSRVDAARPDWIPATVLLREIEERG
YTGKLRIVQEYLQTLRPASRPDPVVRFETEPGQQMQMDWIEFRKTGHKHGMLAAFVATLGYSRASYVEFVSDMRLETLLT
CHVRAFDAFGGVTKEILYDNMKTVILQRNAYGKQQHRYQPGFADFAKHYGFAPRVCKPYRAKTKGKVERMNGYLRYSFWV
PLASKLKQIGLAADKDLCNQQVGLWLRDVANVRVHGTTKRVPVDVLREERPHLLPTPALYAGRSVRAGATPHETPKPASR
FATPDWHVCLQHPLSVYDSFCQQGVAA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR006120
- InterPro:   IPR012337 [H]

Pfam domain/function: PF02796 HTH_7; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 39426; Mature: 39426

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVQILRRQGCSLRAIATETGMAVNTIRKYLVSGAPERKPREPVVGKLEPFKAFIQSRVD
CCCEEEHHCCCCEEEEHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AARPDWIPATVLLREIEERGYTGKLRIVQEYLQTLRPASRPDPVVRFETEPGQQMQMDWI
HCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH
EFRKTGHKHGMLAAFVATLGYSRASYVEFVSDMRLETLLTCHVRAFDAFGGVTKEILYDN
HHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
MKTVILQRNAYGKQQHRYQPGFADFAKHYGFAPRVCKPYRAKTKGKVERMNGYLRYSFWV
HHHEEEECCCCCCHHHCCCCCHHHHHHHCCCCCCCCCCHHHCCCCHHHHHCCEEEEEEEC
PLASKLKQIGLAADKDLCNQQVGLWLRDVANVRVHGTTKRVPVDVLREERPHLLPTPALY
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHCCCCCCCCCCHHH
AGRSVRAGATPHETPKPASRFATPDWHVCLQHPLSVYDSFCQQGVAA
CCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEVQILRRQGCSLRAIATETGMAVNTIRKYLVSGAPERKPREPVVGKLEPFKAFIQSRVD
CCCEEEHHCCCCEEEEHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AARPDWIPATVLLREIEERGYTGKLRIVQEYLQTLRPASRPDPVVRFETEPGQQMQMDWI
HCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH
EFRKTGHKHGMLAAFVATLGYSRASYVEFVSDMRLETLLTCHVRAFDAFGGVTKEILYDN
HHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
MKTVILQRNAYGKQQHRYQPGFADFAKHYGFAPRVCKPYRAKTKGKVERMNGYLRYSFWV
HHHEEEECCCCCCHHHCCCCCHHHHHHHCCCCCCCCCCHHHCCCCHHHHHCCEEEEEEEC
PLASKLKQIGLAADKDLCNQQVGLWLRDVANVRVHGTTKRVPVDVLREERPHLLPTPALY
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHCCCCCCCCCCHHH
AGRSVRAGATPHETPKPASRFATPDWHVCLQHPLSVYDSFCQQGVAA
CCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]