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The map label for this gene is gdhII [H]

Identifier: 17544934

GI number: 17544934

Start: 237412

End: 238239

Strand: Reverse

Name: gdhII [H]

Synonym: RSc0215

Alternate gene names: 17544934

Gene position: 238239-237412 (Counterclockwise)

Preceding gene: 17544939

Following gene: 17544932

Centisome position: 6.41

GC content: 68.48

Gene sequence:

>828_bases
ATGAAGGATGTTGTCGTAGTGATCGGATCCGGCGCCATCGGCCAGGCGATCGCGAGGCGTGTGAGTACGGGCAAGCATGT
GCTGCTCGCCGATCTGCGCGAAGAGAACGCAAACGCGGCCGCCAGGACGCTCAGCGACGCGGGTTTTGAAGTGAGCACCG
CCTGTGTCGATGTTGCGCTGCGCGAGTCCGTACAGGCGTTGGCCGACACGGCCCAGGCCATCGGTCCCGTCACCGGCGTG
ATCCATGCCGCAGGGGTGTCGCCGACGCAGGCCTCCCCCGCCACCATCCTGAAGGTCGACCTCTATGGCACCGCGCTGGT
GCTGGAAGCGTTCGGCAACGTGATTGCCCGCGGCGGCGCCGGCATCGTCATCGCCTCGCAATCCGGACACCGCCTGCCCG
CGCTGACGCCGGAACAGGACAAGGCCCTGGCCCTGACACCGACCGACGCCCTGCTCGCGCTCCCCATGCTCCAGCCCGAC
CAGGTGACGGACCCGCTGCACGCCTACCAGCTTTCCAAGCGCGGGAACGCACTGCGGGTCATGGCCGAGGCCGTGCGCTG
GGGCAAGCGCGGCGCGCGGGTCAACACCATCAGCCCCGGCATCATCATCACGCCGCTGGCGAACGACGAACTCTCCGGCC
CGCGCGGCGCGGGATACCGCCGGATGATCGAACTGTGCGCCGCCGGACGCGCCGGCACCCCCGACGAGATCGGCAACCTC
GGCGCACTGCTGATGGGGCCGGATGGGACGTTCATTACCGGCAGCGACTTCCTCATTGATGGGGGGGTGACTGCGGCTTA
TTGGTATGGGGAGTTGGGGGCGGGGTGA

Upstream 100 bases:

>100_bases
GCACCGCCGGCGCAGCGATCGGCCCACGCGTCCAAGGCCTGGCGCCGTGGCTGCCTTGCGCACATGATCGTTGGCCTCAA
CCGGCCGGACAGGAGAACCC

Downstream 100 bases:

>100_bases
TTGCGTCCTGGCTCAGCTCGGGTATCGGCAGTTGGCTGAAGATTCGCGACTGCCCGACTCAGCACTCGAGAAGGTGCTGT
CGAAGCGCATCCACCGCCGC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: GLCDH-II [H]

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MKDVVVVIGSGAIGQAIARRVSTGKHVLLADLREENANAAARTLSDAGFEVSTACVDVALRESVQALADTAQAIGPVTGV
IHAAGVSPTQASPATILKVDLYGTALVLEAFGNVIARGGAGIVIASQSGHRLPALTPEQDKALALTPTDALLALPMLQPD
QVTDPLHAYQLSKRGNALRVMAEAVRWGKRGARVNTISPGIIITPLANDELSGPRGAGYRRMIELCAAGRAGTPDEIGNL
GALLMGPDGTFITGSDFLIDGGVTAAYWYGELGAG

Sequences:

>Translated_275_residues
MKDVVVVIGSGAIGQAIARRVSTGKHVLLADLREENANAAARTLSDAGFEVSTACVDVALRESVQALADTAQAIGPVTGV
IHAAGVSPTQASPATILKVDLYGTALVLEAFGNVIARGGAGIVIASQSGHRLPALTPEQDKALALTPTDALLALPMLQPD
QVTDPLHAYQLSKRGNALRVMAEAVRWGKRGARVNTISPGIIITPLANDELSGPRGAGYRRMIELCAAGRAGTPDEIGNL
GALLMGPDGTFITGSDFLIDGGVTAAYWYGELGAG
>Mature_275_residues
MKDVVVVIGSGAIGQAIARRVSTGKHVLLADLREENANAAARTLSDAGFEVSTACVDVALRESVQALADTAQAIGPVTGV
IHAAGVSPTQASPATILKVDLYGTALVLEAFGNVIARGGAGIVIASQSGHRLPALTPEQDKALALTPTDALLALPMLQPD
QVTDPLHAYQLSKRGNALRVMAEAVRWGKRGARVNTISPGIIITPLANDELSGPRGAGYRRMIELCAAGRAGTPDEIGNL
GALLMGPDGTFITGSDFLIDGGVTAAYWYGELGAG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 28210; Mature: 28210

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDVVVVIGSGAIGQAIARRVSTGKHVLLADLREENANAAARTLSDAGFEVSTACVDVAL
CCCEEEEEECCHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHCCCCHHHHHHHHHH
RESVQALADTAQAIGPVTGVIHAAGVSPTQASPATILKVDLYGTALVLEAFGNVIARGGA
HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCC
GIVIASQSGHRLPALTPEQDKALALTPTDALLALPMLQPDQVTDPLHAYQLSKRGNALRV
EEEEECCCCCCCCCCCCCCCCEEEECCCHHHHEECCCCCCCCCCCHHHHHHHCCCCHHHH
MAEAVRWGKRGARVNTISPGIIITPLANDELSGPRGAGYRRMIELCAAGRAGTPDEIGNL
HHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCC
GALLMGPDGTFITGSDFLIDGGVTAAYWYGELGAG
CEEEECCCCCEEECCCEEEECCCEEEEEECCCCCC
>Mature Secondary Structure
MKDVVVVIGSGAIGQAIARRVSTGKHVLLADLREENANAAARTLSDAGFEVSTACVDVAL
CCCEEEEEECCHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHCCCCHHHHHHHHHH
RESVQALADTAQAIGPVTGVIHAAGVSPTQASPATILKVDLYGTALVLEAFGNVIARGGA
HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCC
GIVIASQSGHRLPALTPEQDKALALTPTDALLALPMLQPDQVTDPLHAYQLSKRGNALRV
EEEEECCCCCCCCCCCCCCCCEEEECCCHHHHEECCCCCCCCCCCHHHHHHHCCCCHHHH
MAEAVRWGKRGARVNTISPGIIITPLANDELSGPRGAGYRRMIELCAAGRAGTPDEIGNL
HHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCC
GALLMGPDGTFITGSDFLIDGGVTAAYWYGELGAG
CEEEECCCCCEEECCCEEEECCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA