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The map label for this gene is 17544919

Identifier: 17544919

GI number: 17544919

Start: 222807

End: 223229

Strand: Direct

Name: 17544919

Synonym: RSc0200

Alternate gene names: NA

Gene position: 222807-223229 (Clockwise)

Preceding gene: 17544916

Following gene: 17544920

Centisome position: 6.0

GC content: 60.52

Gene sequence:

>423_bases
ATGAGCCAACTCAGGCGTTACGATCCGTTCGCCATCGAACCGGCGGGCGATATCTTTCAAGGGCTCTTGCGCTCGTTCCG
CGGCGGTATGGATAGCGCACTGCCGTTCAAGGTCGACGTGACGGAGTCCGACACGGCATACAGCGTCGTCGCAGAAATCC
CGGGTGCGAAGAAGGAAGACATCGACGTGACCGTTGATCGCGGCACCGTGATGATCTCGGCCAAGGTGGAGCGCCAGTCC
GAGAAGAAGGAGGGCGAGCGCGTCATCCGCAGCGAGCGCTACAGTGGATCGATGCAGCGCATGTTTACGCTGGAGGCAGG
CGTTGACGAAAACAAGGTGGAAGCGACTTACGAGAGCGGGCTGCTGCGCGTGACACTGCCCAAGAAGGAAGTCTCGCCGC
AGCAACGCATCACCATTCGCTGA

Upstream 100 bases:

>100_bases
TGCTCTGCAGTTGATCTGCCGCAAAACGCGCCTGAGCCGTCGTGCCACGATGAATGTGTCAGTCTCATCCGGTGATGGGG
CCATTCATCAGGAGGCAGCC

Downstream 100 bases:

>100_bases
GCACGGGAGCGGCACGTGCAGTTGCAGTTTCTCGGGGCCACCGAAACGGTGACCGGCTCGAAATACGTGCTGGAGACCGG
TGCGCGTCGCGTGATGGTCG

Product: small HEAT shock protein

Products: NA

Alternate protein names: T786P28D [H]

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSQLRRYDPFAIEPAGDIFQGLLRSFRGGMDSALPFKVDVTESDTAYSVVAEIPGAKKEDIDVTVDRGTVMISAKVERQS
EKKEGERVIRSERYSGSMQRMFTLEAGVDENKVEATYESGLLRVTLPKKEVSPQQRITIR

Sequences:

>Translated_140_residues
MSQLRRYDPFAIEPAGDIFQGLLRSFRGGMDSALPFKVDVTESDTAYSVVAEIPGAKKEDIDVTVDRGTVMISAKVERQS
EKKEGERVIRSERYSGSMQRMFTLEAGVDENKVEATYESGLLRVTLPKKEVSPQQRITIR
>Mature_139_residues
SQLRRYDPFAIEPAGDIFQGLLRSFRGGMDSALPFKVDVTESDTAYSVVAEIPGAKKEDIDVTVDRGTVMISAKVERQSE
KKEGERVIRSERYSGSMQRMFTLEAGVDENKVEATYESGLLRVTLPKKEVSPQQRITIR

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 15719; Mature: 15588

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLRRYDPFAIEPAGDIFQGLLRSFRGGMDSALPFKVDVTESDTAYSVVAEIPGAKKED
CCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEHEECCCCCCCCC
IDVTVDRGTVMISAKVERQSEKKEGERVIRSERYSGSMQRMFTLEAGVDENKVEATYESG
CEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCEEEHHHCC
LLRVTLPKKEVSPQQRITIR
EEEEEECHHHCCCCCEEEEC
>Mature Secondary Structure 
SQLRRYDPFAIEPAGDIFQGLLRSFRGGMDSALPFKVDVTESDTAYSVVAEIPGAKKED
CCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEHEECCCCCCCCC
IDVTVDRGTVMISAKVERQSEKKEGERVIRSERYSGSMQRMFTLEAGVDENKVEATYESG
CEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCEEEHHHCC
LLRVTLPKKEVSPQQRITIR
EEEEEECHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9168610 [H]