Click here to switch to the map view.

The map label for this gene is cyc1 [H]

Identifier: 17544916

GI number: 17544916

Start: 219719

End: 220339

Strand: Direct

Name: cyc1 [H]

Synonym: RSc0197

Alternate gene names: 17544916

Gene position: 219719-220339 (Clockwise)

Preceding gene: 17544915

Following gene: 17544919

Centisome position: 5.91

GC content: 63.93

Gene sequence:

>621_bases
ATGAAGGGATTCCATCAACCCAGGCGGGTCTGGCTCGCCGGCCTGGTCACCCTGGCGACAATCGGCTGGTCGGTCACAGT
CGGTGCGCAGGACGGCGAAAAGCTGGCCGCGCAGCTATGTGCGTCCTGCCATGGCGTGCACGGCAAAAGCGAGTCGCCCA
TGTTCCCGCGCCTGGACGCACAGATGCCGCATTACCTGGAGGCGCAGTTGAAGGGCTTCCGAGATCGTGGTCGCGGCGAG
ACCGATGCGCAGGCCTTCATGTGGGGCATAGCCTCACAGCTCGACGACGTGACCATCGCATCGCTGGCTGAGTACTACGC
GCGCCAGACCGCACCTGCTGGCGCCGCGGGTGATCCGGCGCTGACGGCACGCGGCAAGGAGATTTTCGAGCACGGCTTGC
CAGCTGAAGGCGTGCCGGCCTGCGCGTCTTGTCATGGAGCGCAGGCGCAGGGCAATGACACGTTTCCCCGTTTGGCAGGA
CAACACGAGGCCTATCTGCTGCGACAGATCAGTGTCTTCAAGAACGGCACGCGCGCCAATGCACCCGTGATGAGTGCCGT
TGCGCACACCCTGACGGACGAACAGGCGAAAGCGGTCGCTGCATTCTTGCAAGCTCAGTAA

Upstream 100 bases:

>100_bases
ACGGCAACGGTCGCAACGCGATCGACAACAACACCATTTATCTGCTGGGCTGGTTCATGTTCTAGCCGCCGCGCCAGCGC
AGCGATGTGAGGGGGGAACG

Downstream 100 bases:

>100_bases
ATGCGGCCACCCGCTTGTTGACCTGTGCGCCAATTCAATCTCGCGTCGCCCGTGGGTCTTCGGAGGATGGTGCAGCCGGC
TCCCGGCGTCGCCAACGCAG

Product: cytochrome C signal peptide protein

Products: NA

Alternate protein names: Cytochrome c552 [H]

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKGFHQPRRVWLAGLVTLATIGWSVTVGAQDGEKLAAQLCASCHGVHGKSESPMFPRLDAQMPHYLEAQLKGFRDRGRGE
TDAQAFMWGIASQLDDVTIASLAEYYARQTAPAGAAGDPALTARGKEIFEHGLPAEGVPACASCHGAQAQGNDTFPRLAG
QHEAYLLRQISVFKNGTRANAPVMSAVAHTLTDEQAKAVAAFLQAQ

Sequences:

>Translated_206_residues
MKGFHQPRRVWLAGLVTLATIGWSVTVGAQDGEKLAAQLCASCHGVHGKSESPMFPRLDAQMPHYLEAQLKGFRDRGRGE
TDAQAFMWGIASQLDDVTIASLAEYYARQTAPAGAAGDPALTARGKEIFEHGLPAEGVPACASCHGAQAQGNDTFPRLAG
QHEAYLLRQISVFKNGTRANAPVMSAVAHTLTDEQAKAVAAFLQAQ
>Mature_206_residues
MKGFHQPRRVWLAGLVTLATIGWSVTVGAQDGEKLAAQLCASCHGVHGKSESPMFPRLDAQMPHYLEAQLKGFRDRGRGE
TDAQAFMWGIASQLDDVTIASLAEYYARQTAPAGAAGDPALTARGKEIFEHGLPAEGVPACASCHGAQAQGNDTFPRLAG
QHEAYLLRQISVFKNGTRANAPVMSAVAHTLTDEQAKAVAAFLQAQ

Specific function: Diheme, high potential cytochrome c [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 21926; Mature: 21926

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGFHQPRRVWLAGLVTLATIGWSVTVGAQDGEKLAAQLCASCHGVHGKSESPMFPRLDA
CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
QMPHYLEAQLKGFRDRGRGETDAQAFMWGIASQLDDVTIASLAEYYARQTAPAGAAGDPA
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
LTARGKEIFEHGLPAEGVPACASCHGAQAQGNDTFPRLAGQHEAYLLRQISVFKNGTRAN
HHHCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCC
APVMSAVAHTLTDEQAKAVAAFLQAQ
CHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKGFHQPRRVWLAGLVTLATIGWSVTVGAQDGEKLAAQLCASCHGVHGKSESPMFPRLDA
CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
QMPHYLEAQLKGFRDRGRGETDAQAFMWGIASQLDDVTIASLAEYYARQTAPAGAAGDPA
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
LTARGKEIFEHGLPAEGVPACASCHGAQAQGNDTFPRLAGQHEAYLLRQISVFKNGTRAN
HHHCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCC
APVMSAVAHTLTDEQAKAVAAFLQAQ
CHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973648 [H]