| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is lpxP [H]
Identifier: 17544854
GI number: 17544854
Start: 157732
End: 158649
Strand: Direct
Name: lpxP [H]
Synonym: RSc0135
Alternate gene names: 17544854
Gene position: 157732-158649 (Clockwise)
Preceding gene: 17544852
Following gene: 17544855
Centisome position: 4.24
GC content: 66.67
Gene sequence:
>918_bases TTGCCGGACGGCGATTCGAGGCCCTTTTTTCCCCTGTCTCACGCGACCAACACTCCCGCGCATGCACGCATGACCTTCCT GTTCTGGCTGTTTTCACGCTGGCCCTTGTCGTGGCTGCAGGCGCTGGGCGGCTGGCTGGGAGCCTTGGCGGCACGGGTGC CGGGCCGCTATCACGACCGGCTCGTCGCCAATTTCCGCCACGCCTATCCCGACGTCACGCCCGCCATGCTCAAGGAAGCG GGGCGATCCGCCGGCCGCATGGTGTTCGAGATGCCGTACTTCTGGATGCGCAAGAACGGGACGGACATCACGCCGGACCT GATCGACGACTGCTGGCCGACTTGCGAGCGCCTGCTAGAGAACGGCCGCGGCGTCATTTTCTTGACCCCGCACCTGGGTT GCTTTGAAGTGCTGCCGCAGGCTTACGCGCGGCGCCTGCCGGTCACGTCGATGTTCAAGCCGCCCCACCAGGAAAGCTTG CGCGCCTGGATCGAGCGCATGCGCACGCGGCCGAACATGCAGATGGCGCCCGCCGACTCGCGCGGCGTGCGCATGGTGGT GCGCGCACTCAAACGAGGCGAGGCTGTAGGCATCCTGCCCGACCAGACGCCCACGGCGGGCGAGGGCGTCTGGGCGCCGT TCTTCGGCAAGCCCGCCTATACGATGACGCTGGTGCACCGCCTGCACCGGCTGACCGGTGCCCCTGTGGCCGTGGTGTTC AGCGAGCGCCTGCCGCGCGGCAAGGGCTATCGTCTACACCTGCGTGTGATCGGTGATTTACCCGAAGACGCGACTGCCGC CGCCACCCGCATCAACGCCGAAATCGAACAGTTGATTGCCCTGGCACCGACGCAATATCTCTGGGGCTATAACCGCTACA AGCGACCGAAGGGCGTGGACGCCCCGCCCGCTGCCTGA
Upstream 100 bases:
>100_bases TTTATCAACCTCATCCAGGTTTGTGGCCGGACAAGGATTCGCCCCGCAAGTTGTCAGTTAACTCAGCGAATCGCGCTATT ATACGCGGCACTTCGGGGTC
Downstream 100 bases:
>100_bases CGCTGCTGCCGCACTTTATGGAACGTTTCACTGCCAAACTCGGACTCGGCTTCCTGTGGCTGCTGTCCTTCTTCCCGTAC GGTTTCGTCGCCCGCTTCGG
Product: lipid A biosynthesis lauroyl acyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MPDGDSRPFFPLSHATNTPAHARMTFLFWLFSRWPLSWLQALGGWLGALAARVPGRYHDRLVANFRHAYPDVTPAMLKEA GRSAGRMVFEMPYFWMRKNGTDITPDLIDDCWPTCERLLENGRGVIFLTPHLGCFEVLPQAYARRLPVTSMFKPPHQESL RAWIERMRTRPNMQMAPADSRGVRMVVRALKRGEAVGILPDQTPTAGEGVWAPFFGKPAYTMTLVHRLHRLTGAPVAVVF SERLPRGKGYRLHLRVIGDLPEDATAAATRINAEIEQLIALAPTQYLWGYNRYKRPKGVDAPPAA
Sequences:
>Translated_305_residues MPDGDSRPFFPLSHATNTPAHARMTFLFWLFSRWPLSWLQALGGWLGALAARVPGRYHDRLVANFRHAYPDVTPAMLKEA GRSAGRMVFEMPYFWMRKNGTDITPDLIDDCWPTCERLLENGRGVIFLTPHLGCFEVLPQAYARRLPVTSMFKPPHQESL RAWIERMRTRPNMQMAPADSRGVRMVVRALKRGEAVGILPDQTPTAGEGVWAPFFGKPAYTMTLVHRLHRLTGAPVAVVF SERLPRGKGYRLHLRVIGDLPEDATAAATRINAEIEQLIALAPTQYLWGYNRYKRPKGVDAPPAA >Mature_304_residues PDGDSRPFFPLSHATNTPAHARMTFLFWLFSRWPLSWLQALGGWLGALAARVPGRYHDRLVANFRHAYPDVTPAMLKEAG RSAGRMVFEMPYFWMRKNGTDITPDLIDDCWPTCERLLENGRGVIFLTPHLGCFEVLPQAYARRLPVTSMFKPPHQESLR AWIERMRTRPNMQMAPADSRGVRMVVRALKRGEAVGILPDQTPTAGEGVWAPFFGKPAYTMTLVHRLHRLTGAPVAVVFS ERLPRGKGYRLHLRVIGDLPEDATAAATRINAEIEQLIALAPTQYLWGYNRYKRPKGVDAPPAA
Specific function: Unknown
COG id: COG1560
COG function: function code M; Lauroyl/myristoyl acyltransferase
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the htrB/msbB family [H]
Homologues:
Organism=Escherichia coli, GI87082094, Length=288, Percent_Identity=30.5555555555556, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787292, Length=288, Percent_Identity=27.4305555555556, Blast_Score=84, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004960 - InterPro: IPR011920 [H]
Pfam domain/function: PF03279 Lip_A_acyltrans [H]
EC number: 2.3.1.-
Molecular weight: Translated: 34425; Mature: 34294
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDGDSRPFFPLSHATNTPAHARMTFLFWLFSRWPLSWLQALGGWLGALAARVPGRYHDR CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHH LVANFRHAYPDVTPAMLKEAGRSAGRMVFEMPYFWMRKNGTDITPDLIDDCWPTCERLLE HHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCHHEEECCCCCCCHHHHHHHHHHHHHHHH NGRGVIFLTPHLGCFEVLPQAYARRLPVTSMFKPPHQESLRAWIERMRTRPNMQMAPADS CCCEEEEECCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHCCCCCEECCCCC RGVRMVVRALKRGEAVGILPDQTPTAGEGVWAPFFGKPAYTMTLVHRLHRLTGAPVAVVF HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHH SERLPRGKGYRLHLRVIGDLPEDATAAATRINAEIEQLIALAPTQYLWGYNRYKRPKGVD HHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHCCCCCCCC APPAA CCCCC >Mature Secondary Structure PDGDSRPFFPLSHATNTPAHARMTFLFWLFSRWPLSWLQALGGWLGALAARVPGRYHDR CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHH LVANFRHAYPDVTPAMLKEAGRSAGRMVFEMPYFWMRKNGTDITPDLIDDCWPTCERLLE HHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCHHEEECCCCCCCHHHHHHHHHHHHHHHH NGRGVIFLTPHLGCFEVLPQAYARRLPVTSMFKPPHQESLRAWIERMRTRPNMQMAPADS CCCEEEEECCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHCCCCCEECCCCC RGVRMVVRALKRGEAVGILPDQTPTAGEGVWAPFFGKPAYTMTLVHRLHRLTGAPVAVVF HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHH SERLPRGKGYRLHLRVIGDLPEDATAAATRINAEIEQLIALAPTQYLWGYNRYKRPKGVD HHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHCCCCCCCC APPAA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]