Click here to switch to the map view.

The map label for this gene is ygiV [H]

Identifier: 17544851

GI number: 17544851

Start: 154813

End: 155610

Strand: Reverse

Name: ygiV [H]

Synonym: RSc0132

Alternate gene names: 17544851

Gene position: 155610-154813 (Counterclockwise)

Preceding gene: 17544853

Following gene: 17544849

Centisome position: 4.19

GC content: 70.55

Gene sequence:

>798_bases
GTGGCGCGGCTGGCCGAGGTGGCGGCGTTCTCGCCGTACCACTTTCATCGGCAGTTCACGCTGCTGTTCGGCGTGAACGT
CGGACGCTATGTGCAGTTGTTGCGGCTCAAGCGCGCCGCGCACCAGCTCGCCTATCGGGACGCCGCGCGCATCACCGACA
TCGCGCTGGCATGCGGGTATGAGGGGCCGGAGGCCTTTGCGCGTGCGTTCCGCAAACAGTCGGGGCAATCGCCGTCGGCG
TTCCGCGCGGCGCCGCAGTGGGGCACCTGGGCCACCGATCTACAGGCGCTGCACGCCCTCAGGAGCGAACACATGCCCGC
ACAACCGCAACCCCATGCCGTCGAGATCATCGAACGCGAGGACGTGCCCGTCGCCGCCATCGAGCATCGCGGCGATCCGG
CGCGCCTGGGCGAGACCCTCCGCGCCTTCATCGCCTGGCGCAGGGCGAACCGCCTGCCGCCCGCGGTGAGCGCCACCTAC
AACATCGTCTACGACAACCCGGACGACACGCCGCCCGAGGCGTTCCGCATGGACATCTGCGCGGCCACGCCCGCACCGGT
GGCGCCGAACGAGCCCGGGGTGGTGGGCAAGACCCTGGCCGGCGGCCGGTACGCGGTGCTGCGCCATGCCGGTTCGGACG
ACACGCTGGACCAGACCGTCGCCTACCTGTATGCCGAATGGCTGCCGGCCAGCGGGGAAGAACCGCGCGATGCGCCGCTG
CTGTTCCAGCGCGTGCGGTTCTACCCCGATGTGCCCGAGCACGAGGCCGTGACGGACGTACTGCTGCCGCTGCGCTGA

Upstream 100 bases:

>100_bases
CCAGGAGCCCTTTGCATTGACCACCGCCGCCGACCGCTACCTCGCCCGCCTGCGCAACGTCCTCGCGCACATCGACGCGC
ATCTGGACGAGACGCTGGAC

Downstream 100 bases:

>100_bases
CAGCGGCGCGCGGGCCGGGCTCAGGCGTCCAGGCGGATCTGGATGCCGGTCGACGTGTAGAGCGCGGTGGCCTTGAAGCC
GTCGACCACGACCGAGGTGA

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MARLAEVAAFSPYHFHRQFTLLFGVNVGRYVQLLRLKRAAHQLAYRDAARITDIALACGYEGPEAFARAFRKQSGQSPSA
FRAAPQWGTWATDLQALHALRSEHMPAQPQPHAVEIIEREDVPVAAIEHRGDPARLGETLRAFIAWRRANRLPPAVSATY
NIVYDNPDDTPPEAFRMDICAATPAPVAPNEPGVVGKTLAGGRYAVLRHAGSDDTLDQTVAYLYAEWLPASGEEPRDAPL
LFQRVRFYPDVPEHEAVTDVLLPLR

Sequences:

>Translated_265_residues
MARLAEVAAFSPYHFHRQFTLLFGVNVGRYVQLLRLKRAAHQLAYRDAARITDIALACGYEGPEAFARAFRKQSGQSPSA
FRAAPQWGTWATDLQALHALRSEHMPAQPQPHAVEIIEREDVPVAAIEHRGDPARLGETLRAFIAWRRANRLPPAVSATY
NIVYDNPDDTPPEAFRMDICAATPAPVAPNEPGVVGKTLAGGRYAVLRHAGSDDTLDQTVAYLYAEWLPASGEEPRDAPL
LFQRVRFYPDVPEHEAVTDVLLPLR
>Mature_264_residues
ARLAEVAAFSPYHFHRQFTLLFGVNVGRYVQLLRLKRAAHQLAYRDAARITDIALACGYEGPEAFARAFRKQSGQSPSAF
RAAPQWGTWATDLQALHALRSEHMPAQPQPHAVEIIEREDVPVAAIEHRGDPARLGETLRAFIAWRRANRLPPAVSATYN
IVYDNPDDTPPEAFRMDICAATPAPVAPNEPGVVGKTLAGGRYAVLRHAGSDDTLDQTVAYLYAEWLPASGEEPRDAPLL
FQRVRFYPDVPEHEAVTDVLLPLR

Specific function: Represses expression of mcbR [H]

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI48994918, Length=152, Percent_Identity=42.7631578947368, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 29411; Mature: 29279

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLAEVAAFSPYHFHRQFTLLFGVNVGRYVQLLRLKRAAHQLAYRDAARITDIALACGY
CCCHHHHHHCCCHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EGPEAFARAFRKQSGQSPSAFRAAPQWGTWATDLQALHALRSEHMPAQPQPHAVEIIERE
CCHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
DVPVAAIEHRGDPARLGETLRAFIAWRRANRLPPAVSATYNIVYDNPDDTPPEAFRMDIC
CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
AATPAPVAPNEPGVVGKTLAGGRYAVLRHAGSDDTLDQTVAYLYAEWLPASGEEPRDAPL
CCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH
LFQRVRFYPDVPEHEAVTDVLLPLR
HHHHHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
ARLAEVAAFSPYHFHRQFTLLFGVNVGRYVQLLRLKRAAHQLAYRDAARITDIALACGY
CCHHHHHHCCCHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EGPEAFARAFRKQSGQSPSAFRAAPQWGTWATDLQALHALRSEHMPAQPQPHAVEIIERE
CCHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
DVPVAAIEHRGDPARLGETLRAFIAWRRANRLPPAVSATYNIVYDNPDDTPPEAFRMDIC
CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
AATPAPVAPNEPGVVGKTLAGGRYAVLRHAGSDDTLDQTVAYLYAEWLPASGEEPRDAPL
CCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH
LFQRVRFYPDVPEHEAVTDVLLPLR
HHHHHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]