| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17544774
Identifier: 17544774
GI number: 17544774
Start: 60624
End: 61601
Strand: Reverse
Name: 17544774
Synonym: RSc0055
Alternate gene names: NA
Gene position: 61601-60624 (Counterclockwise)
Preceding gene: 17544775
Following gene: 17544773
Centisome position: 1.66
GC content: 75.36
Gene sequence:
>978_bases ATGCGCCCGCAACGCGCGGTGATGCGCCGGGTGCGTCGCGCATCGCGTGCCCTGTCGCGCGGGCTGGCCGGCGTGCTGCT GGCAACGAGCGCGCTCGCCAGCGCGCAGCCCGACATGCCGGCCGCCCATGCGCCGTCGGCGGCGGAACTGGGCGTGCAGA CCGTGCAGATTCCGCGCGCCGTCATGAAGGATGCCGAGGACGCGCCGCAGACGCTGACCGCATACTGGATCGCGCCGGGC CGCAAGAGCGCCGCCGCCGGCGCGCCGGTGGTGGTCGCGCTGCACGGCTGCGGCGGCCTGTACACGCCGGCCGGCGCGGA CGCCATGGCGCTCGGCGAACGCTATCGCGGCTACGCGCAATGGCTGGCCGCACGCGGCTATGCGGTGGTGCTGCCCGATA GCTTCGGCCCGCGCGGCAAGCCGCACGGCATCTGCACCGAGCCGACGGCCGGGCGCAGCATCGACGGCGCGGCGCGGCGT GCCGACATCCTGGCGACGCTGCGCTGGATTGCCGCGCAGCCCGGACTGGACACGCGCCACATCGTGCTGCTCGGCTGGTC CAACGGCGCGCAGGCGGTGCTGGACACCGTGGATGCCAGCCGCACCTGGCCCGCCGGCACGCCGGACGTGGAGCGCGCGG TGGCGTTCGACCCCGGCTGCCTCGCCGCGCTGCGACGTCCGGCCTACCGGCTGAACGCGCCGCTGCTGCTGTTGGCCGGC GCCTACGACGACTGGACGCCCGCCGACCGCTGCCAGGCCCTGCAAAGCGCGGTGCTGGCCCGCCAGCCGCAGGCGCGCTT CGCGCTGGAGCAGCTCGGCGGCACTGACCATGGCTTCGACGGCACGGCACCGCTCGCGCCGCGCAAGGACATCCCGGACG GCGCGCGCCATGGCACCGTCACGATCGGCGGCGATCCGGCGGCGCGCGAAGCGGCCTTCACGCAGCTGGCGGCATGGCTG GATAATCCGCACCCTTGA
Upstream 100 bases:
>100_bases CGCGCCGCGTCACGCTGGCACACGCCAACTGCGAAGCGCATTGCACCCCCGGCATCTATGAGGAAGCCTGGCCGGTGATG TTCGATCCGCAAACGGGACA
Downstream 100 bases:
>100_bases GCGCCGCCCACCTAGCAGCGCCGCACGCACGAACACGGAACACACCTAGGATTCACACCACAACAATCGACAGGACACAC GCAACATGCAATGGGAAGTG
Product: signal peptide protein
Products: NA
Alternate protein names: Dienelactone Hydrolase Family Protein; Dienelactone Hydrolase Family; Signal Peptide Protein; Dienelactone Hydrolase Or
Number of amino acids: Translated: 325; Mature: 325
Protein sequence:
>325_residues MRPQRAVMRRVRRASRALSRGLAGVLLATSALASAQPDMPAAHAPSAAELGVQTVQIPRAVMKDAEDAPQTLTAYWIAPG RKSAAAGAPVVVALHGCGGLYTPAGADAMALGERYRGYAQWLAARGYAVVLPDSFGPRGKPHGICTEPTAGRSIDGAARR ADILATLRWIAAQPGLDTRHIVLLGWSNGAQAVLDTVDASRTWPAGTPDVERAVAFDPGCLAALRRPAYRLNAPLLLLAG AYDDWTPADRCQALQSAVLARQPQARFALEQLGGTDHGFDGTAPLAPRKDIPDGARHGTVTIGGDPAAREAAFTQLAAWL DNPHP
Sequences:
>Translated_325_residues MRPQRAVMRRVRRASRALSRGLAGVLLATSALASAQPDMPAAHAPSAAELGVQTVQIPRAVMKDAEDAPQTLTAYWIAPG RKSAAAGAPVVVALHGCGGLYTPAGADAMALGERYRGYAQWLAARGYAVVLPDSFGPRGKPHGICTEPTAGRSIDGAARR ADILATLRWIAAQPGLDTRHIVLLGWSNGAQAVLDTVDASRTWPAGTPDVERAVAFDPGCLAALRRPAYRLNAPLLLLAG AYDDWTPADRCQALQSAVLARQPQARFALEQLGGTDHGFDGTAPLAPRKDIPDGARHGTVTIGGDPAAREAAFTQLAAWL DNPHP >Mature_325_residues MRPQRAVMRRVRRASRALSRGLAGVLLATSALASAQPDMPAAHAPSAAELGVQTVQIPRAVMKDAEDAPQTLTAYWIAPG RKSAAAGAPVVVALHGCGGLYTPAGADAMALGERYRGYAQWLAARGYAVVLPDSFGPRGKPHGICTEPTAGRSIDGAARR ADILATLRWIAAQPGLDTRHIVLLGWSNGAQAVLDTVDASRTWPAGTPDVERAVAFDPGCLAALRRPAYRLNAPLLLLAG AYDDWTPADRCQALQSAVLARQPQARFALEQLGGTDHGFDGTAPLAPRKDIPDGARHGTVTIGGDPAAREAAFTQLAAWL DNPHP
Specific function: Unknown
COG id: COG0412
COG function: function code Q; Dienelactone hydrolase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34096; Mature: 34096
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPQRAVMRRVRRASRALSRGLAGVLLATSALASAQPDMPAAHAPSAAELGVQTVQIPRA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHH VMKDAEDAPQTLTAYWIAPGRKSAAAGAPVVVALHGCGGLYTPAGADAMALGERYRGYAQ HHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH WLAARGYAVVLPDSFGPRGKPHGICTEPTAGRSIDGAARRADILATLRWIAAQPGLDTRH HHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE IVLLGWSNGAQAVLDTVDASRTWPAGTPDVERAVAFDPGCLAALRRPAYRLNAPLLLLAG EEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHCCHHHCCCCEEEEEC AYDDWTPADRCQALQSAVLARQPQARFALEQLGGTDHGFDGTAPLAPRKDIPDGARHGTV CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE TIGGDPAAREAAFTQLAAWLDNPHP EECCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MRPQRAVMRRVRRASRALSRGLAGVLLATSALASAQPDMPAAHAPSAAELGVQTVQIPRA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHH VMKDAEDAPQTLTAYWIAPGRKSAAAGAPVVVALHGCGGLYTPAGADAMALGERYRGYAQ HHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH WLAARGYAVVLPDSFGPRGKPHGICTEPTAGRSIDGAARRADILATLRWIAAQPGLDTRH HHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE IVLLGWSNGAQAVLDTVDASRTWPAGTPDVERAVAFDPGCLAALRRPAYRLNAPLLLLAG EEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHCCHHHCCCCEEEEEC AYDDWTPADRCQALQSAVLARQPQARFALEQLGGTDHGFDGTAPLAPRKDIPDGARHGTV CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE TIGGDPAAREAAFTQLAAWLDNPHP EECCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA