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The map label for this gene is regA [H]

Identifier: 17544759

GI number: 17544759

Start: 43274

End: 43852

Strand: Direct

Name: regA [H]

Synonym: RSc0040

Alternate gene names: 17544759

Gene position: 43274-43852 (Clockwise)

Preceding gene: 17544758

Following gene: 17544760

Centisome position: 1.16

GC content: 71.5

Gene sequence:

>579_bases
ATGCAGCAACCCGCCCCCTTCCTGATCCTCGACGACGATGACGTGTTCGCGCAGACGCTCGCGCGTGCCCTGACCCGCCG
CGGCTTCGCGCCGCAGATCGCCCATACCGGCGGCGAGGCGCTGTCGCTGGCCCGCCAGACGCCCTTCGCGTACGTGACGG
TCGACCTGCACCTGGCCGCCAGCGACCGGGGCCTGATGCCGCACGGGGGCACCGATTCCGGCCTGCACTGGATCGCCCCG
CTGCGCCAGGCGCTGCCCGAGGCGCGCATGCTGGTGCTGACCGGCTATGCCAGCATCGCCACCGCCGTGCAGGCGGTGAA
GCTGGGCGCGGACGAATACCTGGCCAAGCCGGCCAATGTCGATTCGATCCTGCTCGCGCTGCAGGTGGGCGTGTCCGAAG
CGGTGGCCGAGCAGACCATGGAGAACCCGGCGCCGCTGTCGGTGGCGCGGCTGGAGTGGGAGCACATCCAGCGCGTGCTG
TCCGAGCACGGCGGCAACATCTCCGCCACCGCGCGCGCGCTGAACATGCACCGGCGCACGCTGCAGCGCAAGCTGGGCAA
GCGCCCGGTGGCCAAATAG

Upstream 100 bases:

>100_bases
CCTAATGCACAACCGGCCGCACCCGCCATCGGTGCGCCGACCCTGTTGACCTGATTGACGATCTGATGAGGCCGCGGTCA
GCGCGGTCCGGAGAAACACC

Downstream 100 bases:

>100_bases
GTCGGTCCGGCTATCCGCGCCGTCTGCAACAGCAGCGGCCGCGGACAGCCGGCACGCGCCTCCGGTTCCGCTGCGCATGG
CCTCGGAGCCGAAAAACTTC

Product: response regulator transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MQQPAPFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRGLMPHGGTDSGLHWIAP
LRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSILLALQVGVSEAVAEQTMENPAPLSVARLEWEHIQRVL
SEHGGNISATARALNMHRRTLQRKLGKRPVAK

Sequences:

>Translated_192_residues
MQQPAPFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRGLMPHGGTDSGLHWIAP
LRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSILLALQVGVSEAVAEQTMENPAPLSVARLEWEHIQRVL
SEHGGNISATARALNMHRRTLQRKLGKRPVAK
>Mature_192_residues
MQQPAPFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRGLMPHGGTDSGLHWIAP
LRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSILLALQVGVSEAVAEQTMENPAPLSVARLEWEHIQRVL
SEHGGNISATARALNMHRRTLQRKLGKRPVAK

Specific function: Member of the two-component regulatory system regB/regA. Involved in transactivating anaerobic expression of the photosynthetic apparatus. It is a transcriptional regulator that is responsible for activating expression of the puf, puh, and puc operons in

COG id: COG4567

COG function: function code TK; Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790437, Length=122, Percent_Identity=33.6065573770492, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR002197
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 20724; Mature: 20724

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQPAPFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAA
CCCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHCCCEEEEEEEEEEEC
SDRGLMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANV
CCCCCCCCCCCCCCHHHHHHHHHHCCHHHEEEEECHHHHHHHHHHHHCCHHHHHCCCCCH
DSILLALQVGVSEAVAEQTMENPAPLSVARLEWEHIQRVLSEHGGNISATARALNMHRRT
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LQRKLGKRPVAK
HHHHHCCCCCCC
>Mature Secondary Structure
MQQPAPFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAA
CCCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHCCCEEEEEEEEEEEC
SDRGLMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANV
CCCCCCCCCCCCCCHHHHHHHHHHCCHHHEEEEECHHHHHHHHHHHHCCHHHHHCCCCCH
DSILLALQVGVSEAVAEQTMENPAPLSVARLEWEHIQRVLSEHGGNISATARALNMHRRT
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LQRKLGKRPVAK
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA