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The map label for this gene is ydcM [C]

Identifier: 17232699

GI number: 17232699

Start: 6209607

End: 6210848

Strand: Reverse

Name: ydcM [C]

Synonym: all5207

Alternate gene names: 17232699

Gene position: 6210848-6209607 (Counterclockwise)

Preceding gene: 17232702

Following gene: 17232698

Centisome position: 96.84

GC content: 45.01

Gene sequence:

>1242_bases
ATGCTGGTATTTGAGGCAAAACTTGAGGGACTGGATGAGCAGTATCAATCGCTAGATGAGGCGATTAGAACTGCTCGTTT
TGTTCGTAATAGCTGTCTGAGATACTGGATGGACAATAAAGATATAGGCAGATATGAGCTTTCCGCATATTGTGCTGTGT
TAGCACAACAGTTTGAGTTTGCGAAAAATCTCAACTCGATGGCTCGTCAAGCCAGTGCAGAAAGAGCGTGGTCTGCTATT
GCTCGGTTTTTTGATAACTGCAAGAAAAAGAAACCAGGAAAAAAGGGATTCCCAAAGTTCAAGAAAGAGCAAACGCACGG
TTCTGTAGAGTACAAAACTTGTGGATGGCGACTTTCTGATGACCGCAGGTACATCACTTTCTCCGATGGATTTAAAGCAG
GAACTTTCAAGCTTTGGGGAACCCGTGACCTGCATTTCTACCAACTTAAACAGTTTAAAAGGGTGCGGGTTGTGCGTCGT
GCGGATGGCTATTATTGCCGGTTTTGCATTGACCATGAACGAGTAGAAAAGCGAAAACCAACGGGTAAAACTATTGGCAT
TGATGTGGGATTGAACCACTTTTATACAGATAGTAACGGGGAAACAGTCGCCAATCCTAGACATCTTCGCAAAAGTGAAA
AGTCTTTGAGACGATTGCAACGCCGGATGTCTAAGACCAAAAAGGGTTCTCAAAACAGAATTAAGTTTAGAAATAAACTT
GCTCGTAAGCATCTCAAAGTAAGTCGCCAGCGTAAAGACTTTGCTGTCAAGACAGCAAGGTGCGTAGTGAAGTCTAACGA
CCTTGTGGCGTATGAGGATTTGCAGGTGCGGAATATGGTGAAAAATCACCGCTTGGCTAAGTCGATTAGTGATGTGTCGT
GGTCGCTGTTCCGGGAGTGGGTTGAGTATTTTGGTAAGGTTTTTGGCGTGGTAACTGTTGCAGTTCTGCCTCACTACACT
TCGCAAAATTGCTCTAATTGTGGCGAGATTGTCAAAAAGACTCTTAGCACTAGAACCCATGTTTGTCCTCGTTGTGGGCA
TACCCAAGACCGGGACTGGAACGCGGCGCGGAACATATTAGAAAAAGCATTAAGTACGGCGGGTCACGTCGGAACCAACG
CCTCTGGAGAGACTGATCAATACTTGAGTGAGAAAACTCCTTCAAGCAAATCAACTCGTGGAAAGAGGAAGCCCAAAGAG
CGATCTTTGGAATCCCCCGCTATATCAGGTACTCCTGATTAG

Upstream 100 bases:

>100_bases
TTCTCCGACCATGACTGGCTACAAGCCAGTAAGGGAGAGGGAACCGTTGAGTTTTTTGCAAATCTACGTCATAATTTACA
TTAGCAAATGCGACGTAAAT

Downstream 100 bases:

>100_bases
CGGTGGGAGGATGTGTGCGGTTCGTTTCTATGAAACATAGCGAAAGCTGTGGGGAATAGAGTCCTTGCACCGCCTTGGTC
AATTAGAAATAATTTAACCT

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MLVFEAKLEGLDEQYQSLDEAIRTARFVRNSCLRYWMDNKDIGRYELSAYCAVLAQQFEFAKNLNSMARQASAERAWSAI
ARFFDNCKKKKPGKKGFPKFKKEQTHGSVEYKTCGWRLSDDRRYITFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVVRR
ADGYYCRFCIDHERVEKRKPTGKTIGIDVGLNHFYTDSNGETVANPRHLRKSEKSLRRLQRRMSKTKKGSQNRIKFRNKL
ARKHLKVSRQRKDFAVKTARCVVKSNDLVAYEDLQVRNMVKNHRLAKSISDVSWSLFREWVEYFGKVFGVVTVAVLPHYT
SQNCSNCGEIVKKTLSTRTHVCPRCGHTQDRDWNAARNILEKALSTAGHVGTNASGETDQYLSEKTPSSKSTRGKRKPKE
RSLESPAISGTPD

Sequences:

>Translated_413_residues
MLVFEAKLEGLDEQYQSLDEAIRTARFVRNSCLRYWMDNKDIGRYELSAYCAVLAQQFEFAKNLNSMARQASAERAWSAI
ARFFDNCKKKKPGKKGFPKFKKEQTHGSVEYKTCGWRLSDDRRYITFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVVRR
ADGYYCRFCIDHERVEKRKPTGKTIGIDVGLNHFYTDSNGETVANPRHLRKSEKSLRRLQRRMSKTKKGSQNRIKFRNKL
ARKHLKVSRQRKDFAVKTARCVVKSNDLVAYEDLQVRNMVKNHRLAKSISDVSWSLFREWVEYFGKVFGVVTVAVLPHYT
SQNCSNCGEIVKKTLSTRTHVCPRCGHTQDRDWNAARNILEKALSTAGHVGTNASGETDQYLSEKTPSSKSTRGKRKPKE
RSLESPAISGTPD
>Mature_413_residues
MLVFEAKLEGLDEQYQSLDEAIRTARFVRNSCLRYWMDNKDIGRYELSAYCAVLAQQFEFAKNLNSMARQASAERAWSAI
ARFFDNCKKKKPGKKGFPKFKKEQTHGSVEYKTCGWRLSDDRRYITFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVVRR
ADGYYCRFCIDHERVEKRKPTGKTIGIDVGLNHFYTDSNGETVANPRHLRKSEKSLRRLQRRMSKTKKGSQNRIKFRNKL
ARKHLKVSRQRKDFAVKTARCVVKSNDLVAYEDLQVRNMVKNHRLAKSISDVSWSLFREWVEYFGKVFGVVTVAVLPHYT
SQNCSNCGEIVKKTLSTRTHVCPRCGHTQDRDWNAARNILEKALSTAGHVGTNASGETDQYLSEKTPSSKSTRGKRKPKE
RSLESPAISGTPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=303, Percent_Identity=29.7029702970297, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 47744; Mature: 47744

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVFEAKLEGLDEQYQSLDEAIRTARFVRNSCLRYWMDNKDIGRYELSAYCAVLAQQFEF
CEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AKNLNSMARQASAERAWSAIARFFDNCKKKKPGKKGFPKFKKEQTHGSVEYKTCGWRLSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEECCEEECC
DRRYITFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVVRRADGYYCRFCIDHERVEKRKP
CCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCC
TGKTIGIDVGLNHFYTDSNGETVANPRHLRKSEKSLRRLQRRMSKTKKGSQNRIKFRNKL
CCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ARKHLKVSRQRKDFAVKTARCVVKSNDLVAYEDLQVRNMVKNHRLAKSISDVSWSLFREW
HHHHHHHHHHHHHHHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEYFGKVFGVVTVAVLPHYTSQNCSNCGEIVKKTLSTRTHVCPRCGHTQDRDWNAARNIL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
EKALSTAGHVGTNASGETDQYLSEKTPSSKSTRGKRKPKERSLESPAISGTPD
HHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLVFEAKLEGLDEQYQSLDEAIRTARFVRNSCLRYWMDNKDIGRYELSAYCAVLAQQFEF
CEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AKNLNSMARQASAERAWSAIARFFDNCKKKKPGKKGFPKFKKEQTHGSVEYKTCGWRLSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEECCEEECC
DRRYITFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVVRRADGYYCRFCIDHERVEKRKP
CCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCC
TGKTIGIDVGLNHFYTDSNGETVANPRHLRKSEKSLRRLQRRMSKTKKGSQNRIKFRNKL
CCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ARKHLKVSRQRKDFAVKTARCVVKSNDLVAYEDLQVRNMVKNHRLAKSISDVSWSLFREW
HHHHHHHHHHHHHHHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEYFGKVFGVVTVAVLPHYTSQNCSNCGEIVKKTLSTRTHVCPRCGHTQDRDWNAARNIL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
EKALSTAGHVGTNASGETDQYLSEKTPSSKSTRGKRKPKERSLESPAISGTPD
HHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]