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The map label for this gene is ykfC [H]

Identifier: 17232698

GI number: 17232698

Start: 6207390

End: 6209009

Strand: Reverse

Name: ykfC [H]

Synonym: all5206

Alternate gene names: 17232698

Gene position: 6209009-6207390 (Counterclockwise)

Preceding gene: 17232699

Following gene: 17232688

Centisome position: 96.81

GC content: 42.9

Gene sequence:

>1620_bases
GTGCGGTTTGTACAGAAAATATTCAAAGGCGTAGAGAACGTTATGACAACGGAGTTAAATCCAGTTGATAAATGGAAATC
GATACCGTGGCGCAAGCTGCGGAAAATCGTATTTCGCCTACAAGTGAGAATATTCAAGGCTCAAAAGAACGGTAACACGC
GCCTAGTACGCAAACTTCAGAAACTTTTATTAAGCTCTAAAGCAGCTAAATTACTCGCTATCCGGCAGGTAACGCAGCTA
AATACTGGACGGAAAACCGCAGGGGTGGACGGAAAGAAAGCCCTCGAACCCTCTCAAAGATTGGCACTCTACGAAGTGCT
AGTCAAGAACTGGAAACAATGGAAGCACCAGCCCTTAAAGCGAGTGTACATTCCCAAGGCAGACGGAACTAGAAGGGGAT
TAGGGATACCAACCATCAGCGATAGAGCATATCAATGTCTAATCAAATATGCCTTGGAACCAGCAGCAGAAGCTATGTTC
AATGCCCGTTCATACGGGTTTAGACCTGGCAGAAGTTGCCACGATGTACAAAAATTATTATTCAGCAACTTAAACGGTGG
GCAAGCCAACGGATTAAGTAAAAGAATATTAGAACTGGATATCGAAAGGTGTTTCGACAAGATTGACCATAAATTTTTAA
TGCAATCTGTCCAACTACCAAAGGCAGCAAAACAGGGAATATTTTGGGCTATTAAAGCCGGAGTCAGGGGGGAATTTCCT
TCATCAGAATCCGGCACACCGCAAGGCGGCGTAATCAGTCCGTTACTGGCAAATATAGTTCTACACGGACTAGAAAATGT
TGGTCACGAACTAAGATACAAAGTTAGAAGTGGGGGCAGACAAATAGACACCATCAAGGGATTCCGTTATGCGGATGATG
TGGTGTTCTTACTGAAACCTGAAGACAACCCAGAAGCTCTCAGACAAAATATTGATACCTTCTTGGAAGCAAGAGGATTA
AAAGTCAAAGAAGCCAAAACTAAAATTGTACATAGTACAGATAGTTTCGACTTCCTTGGGTGGAACTTTGTAGTTAAACC
CAATGGTAAATTCATTTCAACACCAAGTCAAAAGGCTACAAGTAGCATCAAGGCAAAAGTCAAAGAAGTGATGAAAGACA
GTTGTTTCACTCTAGAGGAACGTATCGACAAATGCGGTGCGATAGTTCGAGGGTGGAGAAACTATCATCGATTCTGTGAT
ATGAGCCAACATAACCTATGGGCTATAGCCTATTGGACATGGAAGTTCATTCGCAAACAAGGAAGATACAACCGCGACCA
AACCAATCAGGTTATACATAGAGCATTTCCCGCCGTAAAATGGGCAGCTTGCAGATTCAATAACGTAACGGAGGATAAAT
CCCCATACGATGGCGACTTTGTTTACTGGTCAAAACGGGAAAATGTAAACTACGACGGGGTAACGGCAAGACTTCTCAAG
AAACAGAATCATAAATGTACAGAATGTAACCTATCGTTCATCTCTGGGGATATTGCAGAATTACACCACATTGATGGCAA
CCATGATAATTGGAAGCCTAACAATCTGGAAGTTCTACACCGAGAATGTCACCAGCATCAGACTATTCATGGTCAGGTGA
GAGTCCGAACGGTGGGTTAA

Upstream 100 bases:

>100_bases
CTCCAGCAATTAAGCTGTGGAACCCTTAAATAAGGTTTAGCGGGTAGAGTTGGTAAGATGTACTCGAAAATCTAAGAAAT
AAGGACTCTTAGACGACTGG

Downstream 100 bases:

>100_bases
CCCCAACCTAGTAGGTATCAAACTAGGAGCCGTGTGCAGTGAAAGTTGCACGCACGGTTCTGAAGGAGAGGTGTCCTAGA
GTAATTTAGGTATCGACTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MRFVQKIFKGVENVMTTELNPVDKWKSIPWRKLRKIVFRLQVRIFKAQKNGNTRLVRKLQKLLLSSKAAKLLAIRQVTQL
NTGRKTAGVDGKKALEPSQRLALYEVLVKNWKQWKHQPLKRVYIPKADGTRRGLGIPTISDRAYQCLIKYALEPAAEAMF
NARSYGFRPGRSCHDVQKLLFSNLNGGQANGLSKRILELDIERCFDKIDHKFLMQSVQLPKAAKQGIFWAIKAGVRGEFP
SSESGTPQGGVISPLLANIVLHGLENVGHELRYKVRSGGRQIDTIKGFRYADDVVFLLKPEDNPEALRQNIDTFLEARGL
KVKEAKTKIVHSTDSFDFLGWNFVVKPNGKFISTPSQKATSSIKAKVKEVMKDSCFTLEERIDKCGAIVRGWRNYHRFCD
MSQHNLWAIAYWTWKFIRKQGRYNRDQTNQVIHRAFPAVKWAACRFNNVTEDKSPYDGDFVYWSKRENVNYDGVTARLLK
KQNHKCTECNLSFISGDIAELHHIDGNHDNWKPNNLEVLHRECHQHQTIHGQVRVRTVG

Sequences:

>Translated_539_residues
MRFVQKIFKGVENVMTTELNPVDKWKSIPWRKLRKIVFRLQVRIFKAQKNGNTRLVRKLQKLLLSSKAAKLLAIRQVTQL
NTGRKTAGVDGKKALEPSQRLALYEVLVKNWKQWKHQPLKRVYIPKADGTRRGLGIPTISDRAYQCLIKYALEPAAEAMF
NARSYGFRPGRSCHDVQKLLFSNLNGGQANGLSKRILELDIERCFDKIDHKFLMQSVQLPKAAKQGIFWAIKAGVRGEFP
SSESGTPQGGVISPLLANIVLHGLENVGHELRYKVRSGGRQIDTIKGFRYADDVVFLLKPEDNPEALRQNIDTFLEARGL
KVKEAKTKIVHSTDSFDFLGWNFVVKPNGKFISTPSQKATSSIKAKVKEVMKDSCFTLEERIDKCGAIVRGWRNYHRFCD
MSQHNLWAIAYWTWKFIRKQGRYNRDQTNQVIHRAFPAVKWAACRFNNVTEDKSPYDGDFVYWSKRENVNYDGVTARLLK
KQNHKCTECNLSFISGDIAELHHIDGNHDNWKPNNLEVLHRECHQHQTIHGQVRVRTVG
>Mature_539_residues
MRFVQKIFKGVENVMTTELNPVDKWKSIPWRKLRKIVFRLQVRIFKAQKNGNTRLVRKLQKLLLSSKAAKLLAIRQVTQL
NTGRKTAGVDGKKALEPSQRLALYEVLVKNWKQWKHQPLKRVYIPKADGTRRGLGIPTISDRAYQCLIKYALEPAAEAMF
NARSYGFRPGRSCHDVQKLLFSNLNGGQANGLSKRILELDIERCFDKIDHKFLMQSVQLPKAAKQGIFWAIKAGVRGEFP
SSESGTPQGGVISPLLANIVLHGLENVGHELRYKVRSGGRQIDTIKGFRYADDVVFLLKPEDNPEALRQNIDTFLEARGL
KVKEAKTKIVHSTDSFDFLGWNFVVKPNGKFISTPSQKATSSIKAKVKEVMKDSCFTLEERIDKCGAIVRGWRNYHRFCD
MSQHNLWAIAYWTWKFIRKQGRYNRDQTNQVIHRAFPAVKWAACRFNNVTEDKSPYDGDFVYWSKRENVNYDGVTARLLK
KQNHKCTECNLSFISGDIAELHHIDGNHDNWKPNNLEVLHRECHQHQTIHGQVRVRTVG

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=286, Percent_Identity=25.5244755244755, Blast_Score=87, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6226521, Length=290, Percent_Identity=24.4827586206897, Blast_Score=80, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 61949; Mature: 61949

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS00028 ZINC_FINGER_C2H2_1 ; PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFVQKIFKGVENVMTTELNPVDKWKSIPWRKLRKIVFRLQVRIFKAQKNGNTRLVRKLQ
CHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH
KLLLSSKAAKLLAIRQVTQLNTGRKTAGVDGKKALEPSQRLALYEVLVKNWKQWKHQPLK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHH
RVYIPKADGTRRGLGIPTISDRAYQCLIKYALEPAAEAMFNARSYGFRPGRSCHDVQKLL
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
FSNLNGGQANGLSKRILELDIERCFDKIDHKFLMQSVQLPKAAKQGIFWAIKAGVRGEFP
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCC
SSESGTPQGGVISPLLANIVLHGLENVGHELRYKVRSGGRQIDTIKGFRYADDVVFLLKP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCCEEECCEEEEECC
EDNPEALRQNIDTFLEARGLKVKEAKTKIVHSTDSFDFLGWNFVVKPNGKFISTPSQKAT
CCCHHHHHHHHHHHHHHCCCEEHHHHHHHEECCCCCEEECEEEEECCCCCEECCCCHHHH
SSIKAKVKEVMKDSCFTLEERIDKCGAIVRGWRNYHRFCDMSQHNLWAIAYWTWKFIRKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHH
GRYNRDQTNQVIHRAFPAVKWAACRFNNVTEDKSPYDGDFVYWSKRENVNYDGVTARLLK
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHH
KQNHKCTECNLSFISGDIAELHHIDGNHDNWKPNNLEVLHRECHQHQTIHGQVRVRTVG
HCCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEECEEEEEECC
>Mature Secondary Structure
MRFVQKIFKGVENVMTTELNPVDKWKSIPWRKLRKIVFRLQVRIFKAQKNGNTRLVRKLQ
CHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH
KLLLSSKAAKLLAIRQVTQLNTGRKTAGVDGKKALEPSQRLALYEVLVKNWKQWKHQPLK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHH
RVYIPKADGTRRGLGIPTISDRAYQCLIKYALEPAAEAMFNARSYGFRPGRSCHDVQKLL
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
FSNLNGGQANGLSKRILELDIERCFDKIDHKFLMQSVQLPKAAKQGIFWAIKAGVRGEFP
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCC
SSESGTPQGGVISPLLANIVLHGLENVGHELRYKVRSGGRQIDTIKGFRYADDVVFLLKP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCCEEECCEEEEECC
EDNPEALRQNIDTFLEARGLKVKEAKTKIVHSTDSFDFLGWNFVVKPNGKFISTPSQKAT
CCCHHHHHHHHHHHHHHCCCEEHHHHHHHEECCCCCEEECEEEEECCCCCEECCCCHHHH
SSIKAKVKEVMKDSCFTLEERIDKCGAIVRGWRNYHRFCDMSQHNLWAIAYWTWKFIRKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHH
GRYNRDQTNQVIHRAFPAVKWAACRFNNVTEDKSPYDGDFVYWSKRENVNYDGVTARLLK
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHH
KQNHKCTECNLSFISGDIAELHHIDGNHDNWKPNNLEVLHRECHQHQTIHGQVRVRTVG
HCCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEECEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]